1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TATCTCCCAATTGAGGGTTCGGCTGCATTTAATAAGGCAACTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGAgtatgtagttgatatagaaaatatagatgatttgaaatttgaaagacattacattttattggttatgaattttttcattttttacttacattattcagttgcaaccag
species | Glycine max |
transcript | GLYMA14G13480.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGA GTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCAEST: gi|192316560|gb|FK006795.1|FK006795
genomic: CTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGAgtatgtagtt ... ttgcaaccagGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCA
EST: CTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGA GTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCAEST: gi|151403769|gb|EV273579.1|EV273579
genomic: CTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGAgtatgtagtt ... ttgcaaccagGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCA
EST: CTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGA GTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCA
genomic: CTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGAgtatgtagtt ... ttgcaaccagGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCTCCCAATTGAGGGTTCGGCTGCATTTAATAAGGCAACTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGAgtatgtagttgatatagaaaatatagatgatttgaaatttgaaagacattacattttattggttatgaattttttcattttttacttacattattcagttgcaaccag
- - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG