Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAGAGAGACCATCAACATTTTGCAGAATCACTACCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgctttgatcttagtcatgtcatgaaatttctggcacaattgggaattttaatagcgattccgttcttaagcacactgaaattacatgttatgcttctattgatgcag

Basic information

species Glycine max
transcript GLYMA14G08180.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08180.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g12420.t01 (Vitis vinifera), 5'ss of exon 5
AGCCAGAGAGACCATCAACATTTTGCAGAATCACTACCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgctttgatcttagtcatgtcatgaaatttctggcacaattgggaattttaata-gcgattccgttcttaagcacactgaa-attacatgttatgcttctattgatgcag
 ||  |||| || || || ||||| ||||| || ||||||||||||||   | ||||||||||||||| ||| || ||  ||||||||||||| |||||||||||  | || |   | |    ||  |  |   ||     |||       |     |  | | ||      |   | || |||||   | || |   | || |             
TGCTCGAGACACAATAAATATTTTACAGAACCATTACCCTGAGAGGCTATTCTTAGCATTTCTTTACAGCCCTCCACGGATTTTTGAAGCTTTCTGGAAGgtttgaattctct--ccctgactataactgg---ttctgaacactgcaaaaatcaccaccatgtgaaattactagaatgctcactgtttactaaacaatgtgatg------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059938|gb|CA802852.1|CA802852
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|209723371|gb|BW651327.1|BW651327
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|209723023|gb|BW668869.1|BW668869
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|208265293|gb|GE064487.1|GE064487
EST:     ATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGTAAGCTTTTTGGTAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCTAGAAGGTGAAGTTTG
genomic: ATAGCATTTCTTTACAACCCCCCTCGAGTTTTTG-AAGCTTTTTGG-AAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTC-AGAAGGTGAAGTTTG
EST: gi|6454433|gb|AW185116.1|AW185116
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTNTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|11411906|gb|BF423917.1|BF423917
EST:     CCATATCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|192309911|gb|FK001455.1|FK001455
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|207692539|gb|GD674036.1|GD674036
EST:     CCATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|209723024|gb|BW668870.1|BW668870
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAGAGAGACCATCAACATTTTGCAGAATCACTACCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgctttgatcttagtcatgtcatgaaatttctggcacaattgggaattttaatagcgattccgttcttaagcacactgaaattacatgttatgcttctattgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG