1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGgtttgttttgtgaattgcatagtccctgatattggatttattataccatcaaatgttttttgaatatgcag
species | Glycine max |
transcript | GLYMA14G05810.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAG TGCCCTTTGTTGTGCAAAGAATTCATCACAGATGCATGGCAACTCTACTATEST: gi|207702282|gb|GD683037.1|GD683037
genomic: GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGgtttgttttg ... gaatatgcagTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTAT
EST: GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAG TGCCCTTTGTTGTGCAAAGAATTCATCACAGATGCATGGCAACTCTACTATEST: gi|193422295|gb|FK389712.1|FK389712
genomic: GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGgtttgttttg ... gaatatgcagTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTAT
EST: GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAG TGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTATEST: gi|208265639|gb|GE063167.1|GE063167
genomic: GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGgtttgttttg ... gaatatgcagTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTAT
EST: TGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAG TGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTAT
genomic: TGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGgtttgttttg ... gaatatgcagTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGgtttgttttgtgaattgcatagtccctgatattggatttattataccatcaaatgttttttgaatatgcag
- - - - - - - - - - - - - AAGAAA