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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccattgtttctcttgttttttttttccttcagaagttttatttttttactggatggtgatgaggaagtttggatttgggtcctggatatcatatttcag

Basic information

species Glycine max
transcript GLYMA14G04890.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccattgtttctcttgttttttttttccttcagaagttttatttttttactggatggtgatgaggaagtttggatttgggtcctggatatcatatttcag
 ||||||||||||||||||||||| |||||||| || || |||||||| || ||||||||||| || || ||  | ||||||||||| || || |||||||| || |             ||| |   |||  | | | |    ||  | | |   || | ||||   ||   |   ||||  |                    
CAAAAAGGAGACTGGCTATGTTGGCCTTAAGAATCAAGGGGCTACATGCTACATGAATTCTCTTCTTCAGACGCTTTACCATATTCCGTACTTCCGAAAGgtgaggc---------taaatttgtaaattctcttaaatga---atcctatgatgcgaggctgatacagagaatgatattttag--------------------

upper sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccattgtttctcttgttttttttttccttcagaagttttatttttttactggatggtgatgaggaagtttggatttgggtcctggatatcatatttcag
 |||||||| || || |||||||| || ||||| || |||||||| ||||||||||| ||||| || |||||  |||||||||| || |||||  | |||||| |  ||  || || ||  |  |  | | | | |   |||   |   |  |||  |   | ||   ||| |||    || |                     
GAAAAAGGAAACAGGATATGTTGGTCTAAAGAATCAAGGAGCTACCTGTTATATGAACTCTCTTCTACAAACACTGTACCATATACCATATTTCAGGAAGgtctgagatcattactttt--tcctagtctacatgatttgttaagtacctgaacttaagactaatt--gaaatttcatcttag---------------------

upper sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcag--ccattgtttctcttgttttttttttccttcagaagttttatttttttactggatggtgatgaggaagtttggatttgggtcctggatatcatatttcag
 ||||| || || || | ||| || |||||||| || || ||||| ||||||||||||||||| || ||||| || |||||||  || |||||| ||||||| |   | ||  ||  |||  | |   | || ||  |      | | ||||  ||    |  |||     | ||||  ||                         
GAAAAAAGAAACAGGTTTTGTAGGTCTTAAGAATCAAGGTGCTACCTGTTATATGAATTCTCTCCTTCAAACGTTATACCATACACCATATTTTAGAAAGgtgaaatcaatcattgttctgttctacatgtttctctaagcacctgaattttgaaccatttattga----aatgttttcatag-----------------------

upper sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccattgtttctcttgttttttttttccttcagaagttttatttttttactggatggtgat-gaggaagtttggatttgggtcctggat-atcatatttcag
||||||||| ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||| | || |||||||| || ||| ||||||| |   |   ||  |||| ||| |   ||   ||     | |||  | | | || || | |  | ||  | | |   | ||   |  ||||| ||  | ||||||
AAAAAAGGAAACTGGTTATGTTGGACTTAAGAACCAAGGAGCAACTTGTTACATGAACTCTCTCCTCCAAACTCTCTATCATATTCCCTACTTTAGAAAGgttaataaccattgttcttttttctacattgtctc-----tgttacatgtcttcttgaagatatttgaaaagggtaacaatt---ttttggatcatgttttttcag

upper sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 5
AAAAAAGGAGACTGGCTATGTTGGACTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccattgtttctcttgttttttttttccttcagaagttttattttttta-ctggatggtgatgaggaagtttggatttgggtcctggatat--catatttcag------------------------------------------------------------
||| |||||||| || |  || ||  | ||||||||||| ||||| || || |||||||| || || ||||||||||| ||||| ||||| || || |||||   |||  ||| ||     |||   |    | |||   | | |||  |||| ||  |  ||| | |     | | |      ||||||  | |    ||||   |                                                            
AAAGAAGGAGACAGGTTTCGTAGGCTTGAAGAACCAGGGTGCTACGTGCTACATGAATTCGCTTCTTCAAACTTTGTATCATATCCCTTACTTCCGCAAGgtt--cca--gttccttcctctttcactcatgtgcagccatataattcatttagctataaagtgctcacagtatgtagtacaaagtcctgtttgtagtgtattcttgttgccacccacgaaaaatgcggtggtcatgatcatatatactggtttcaaatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193399599|gb|FK362592.1|FK362592
EST:     ATTCCTTATTTTCGAAAG                         GCTGTATACCACATGCCAACAACAGAGAATGACATGCCCTCTGGAAGCATC
genomic: ATTCCTTATTTTCGAAAGgtcagccatt ... catatttcagGCTGTATACCACATGCCAACAACAGAGAATGACATGCCCTCTGGAAGCATC
EST: gi|193550344|gb|FK506751.1|FK506751
EST:     ATATGAATTCCCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAG                         GCTGTATACCACATGCCAACAACAGAGAATGACA
genomic: ATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccatt ... catatttcagGCTGTATACCACATGCCAACAACAGAGAATGACA
EST: gi|193715648|gb|FK648951.1|FK648951
EST:     ATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAG                         GCTGTATACCACATGCCAACAACAGAGAATGACATGCCCTCTGGAAGCATC
genomic: ATATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGgtcagccatt ... catatttcagGCTGTATACCACATGCCAACAACAGAGAATGACATGCCCTCTGGAAGCATC