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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGgtattactgttaataccaagtgttatttcatatattaatcgttgttcgttttattgttgtctgagttgtgtttcccttcttaag

Basic information

species Glycine max
transcript GLYMA14G04410.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04410.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 5'ss of exon 6
ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGgtattactgttaataccaagtgtta-tttcatata-ttaatcgttgttcgttttattgttgtctgagttg-tgtttcccttcttaag-----------------
 || ||||| |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||| |||| || || || ||||||| ||   |||    ||   ||  ||||| ||| |||||  |  | | |  | |   | |||   ||  |  | ||| ||||                    
GTACAAAGGAGGCATCTACATGGTTTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTCCCTCAGATAAAGgtatcacaaataacctgaaaaatttctttcagataattaatgatgatgcttgatctctctctctcccttcctcctccccctcttcctcatcctgctgcttccag

upper sequence: GLYMA14G04410.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S235_102V6.1 (Physcomitrella patens), 5'ss of exon 4
ATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGgtattactgttaataccaagtgttatttcatatattaatcgttgttc-gttttattgttgtctgagttgtgtttcccttcttaag---------------------------------------
 |  |||||    || || ||||| ||||| ||||||||||||||||| || || |||||||| || ||||||||| | ||  |  |||||||||| |||||| |   ||     | ||   | | | | |     |||  |   || ||||  ||  |  ||    |||  |    ||    ||                                       
GTTCAAAGGCTCTATTTACATGGTGTTTGAGTACATGGACCATGATTTGACTGGCCTTGCTGATCGGCCTGGGATGCGCTTCTCTATTCCCCAAATCAAGgtact-tcgtgggatcaaaccttcactgcttgagcgaattttctctctgtttccttccttacttttctgtcctcgttttgcacagcccagttccaagttttaacatggatcttcttcactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348210|gb|BM892742.1|BM892742
EST:     CAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAG                         TGTTACATGAGACAGCTTTTGACTGGGCT
genomic: CAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGgtattactgt ... ccttcttaagTGTTACATGAGACAGCTTTTGACTGGGCT