Sequence
atgc intronic sequence ATGC exonic sequenceCCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaatttctcaatattgttcttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgtttccttccatcttcttcgttgtctga...
Basic information
species | Glycine max |
transcript | GLYMA14G04030.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 5
CCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaatttc-----------tcaat------attgttcttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgttt-ccttccatcttc----ttcgttgtctga--------------------------------
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TCATGCAGAGAATGGTGATGCTGTTGCCGAGGGACAACAGCGGATGATTGACCTTGGGATAACTGGTCCAGAAGGGCATGCTCTCTCAAGGCCTCCAATTgtaaccccaaatctaaccttctattcttctgttatgctcctagtcctagatatgttcaggttttcaataataat-taggacactaaggaacctgccatctattctcacattaagctattcaaaaatgaaataattttgttctcattcactgcag
upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 5
CCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaattt---ctcaatattgttc-ttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgtttccttccatcttcttcgttgt--ctga---------------------------
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TCATGCTGAAAATGGAGATGCAGTATTCGAAGGACAGAAAAGAATGATTGAACTGGGCATTACAGGTCCAGAGGGTCATGCTCTTTCAAGGCCTCCTGTGgtaatttgcgtcaagcattttccattttattatactgcctcctagattttttcttttc--tcctatatctgctcttgcctctgtaaagctttgttgaagctactaaaacaagatccttgtttgacaatgtcag
upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 5
CCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaatttctcaatattgttc-ttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgtttccttccatcttcttcgttgtctga
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ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaattccttaaagatgtccattttttctttgaccctgtattgccctctggtgttgcacttatagtattttacatcattaaacctatttttgaacttttg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4396320|gb|AI495317.1|AI495317EST: AACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTG TTGGAAGGAGAGGCAACTGCTCGTGCCATTCGCTTAGCAGATTTTGTGAAT
genomic: AACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaatttctc ... atctgtgtagTTGGAAGGAGAGGCAACTGCTCGTGCCATTCGCTTAGCAGATTTTGTGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaatttctcaatattgttcttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgtttccttccatcttcttcgttgtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG