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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGAGAAAACTCTTGCTGGCTTCAGAAATGGCCATTTCAATGTTTTAGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCAAATGTTGATCTTgtgagttgttttatttctttgaaatagttaagtcggctgatccattggaattgtgtttattgttaattgaattgcaagaaaactcttatttttccatgat...

Basic information

species Glycine max
transcript GLYMA14G03760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03760.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 5
GAGGGAGAAAACTCTTGCTGGCTTCAGAAATGGCCATTTCAATGTTTTAGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCAAATGTTGATCTTgtgagttgttttatttctttgaaatagttaagtcggctgatccattggaattgtgtttattgttaattgaattgcaa-gaaaactcttatttttccatgat----
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GAGGGAAAGAACCCTTTCAGGATTCCGAGATGGGCACTTCAATGTATTAGTTGCCACAGATGTTGCTGCTCGTGGGCTTGATATACCTAATGTTGACCTGgtaagttcttgt-cttctgtacatcatttttgttttaaccatttttgcaataatattttcttctcctta----gcaatgacatttcttatccttagttgatcaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193596|gb|HO040244.1|HO040244
EST:     TGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCAAATGTTGATCTT                         GTAATACATTATGATCTTCCCAACAATTCAGAGATATTTGTTCATCGTTCT
genomic: TGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCAAATGTTGATCTTgtgagttgtt ... ccttctatagGTAATACATTATGATCTTCCCAACAATTCAGAGATATTTGTTCATCGTTCT