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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATTGTCACAGAATATCTACCCCAGgttagtcttggtcctacactggttatatggaagattttttatgataagttattttgcccgtggtgtttatgaacagatcatattggttagttggccaatg...

Basic information

species Glycine max
transcript GLYMA14G03040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03040.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g54480.1 (Oryza sativa), 5'ss of exon 5
TACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATTGTCACAGAATATCTACCCCAGgttagtctt---ggtcctacactggttatatggaagattttttatgataagttat-tttgcccgtggtgtttatg-aacagatcatattggttagttggccaatg
|    | ||  |   |||| ||||||| ||||| || || ||||| |||||||||||||||||||  |||||||||||||| |  |||| | | ||| ||||| ||| |   ||     |  |  | |  | | |   ||   ||      | || |||     ||     |||   | | |    | | |  || ||       
TGATGTGCTACAACTAATACGGCATCCGAATGTCGTGCAATTTTTAGGTGCTGTAACACAAAGCAGCCCAATGATGATTGTAATGGAATTTATGCCCAAGgtttgtcctataggcagcgcttttttaaatttgcattattcacatatctgatcatctttagatctgagacctatttgataaactgcaatagg-agctgctg----

upper sequence: GLYMA14G03040.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 5
TACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATTGTCACAGAATATCTACCCCAGgttagtctt---ggtccta-cactggttata---tggaagatttttta--tgataagttattttgcccgtggtgtttatgaacagatcatattggttagttggccaatg
|    | ||  |    ||| | ||||||||||| || || |||||||| ||||| ||||||||||  ||||||||||||||||  |||| | | | | ||||| |||||   ||   || || || ||  |    ||| || ||  |    | |  |       | |   || | |||    |   | ||  || |||||         
TGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgtttgtcttaagggcaatatcaatgttttcaagtcggacgacttgctggtcgttgtggctgaccgactagggcgattaatcgcgattaatcatgattagt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774326|gb|BG239253.1|BG239253
EST:     CTGTAACACAAAGCACACCAATGATGATTGTCACAGAATATCTACCCCAG                         GGGGATCTCGGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACC
genomic: CTGTAACACAAAGCACACCAATGATGATTGTCACAGAATATCTACCCCAGgttagtcttg ... atctctttagGGGGATCTCGGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACC
EST: gi|9901908|gb|BE610876.1|BE610876
EST:     TGATGATTGTCACAGAATATCTACCCCAG                         GGGGATCTCGGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACC
genomic: TGATGATTGTCACAGAATATCTACCCCAGgttagtcttg ... atctctttagGGGGATCTCGGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAGTAACC