1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGCTTGCGTTATGACAATTTGGAGTCAACTTCAACCTGAATATGCAGCAAATATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTAAAgtatgctgcaatcttgtttcttgctccaatacacacacccacacttgaaaaaggagaaataattttatttcttgatcagaaaatgtattataattaatac...
species | Glycine max |
transcript | GLYMA14G02820.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGCAAATATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTAAA GGACTTGATCTTCCAGAAGTTTTAGTAGAAGTTGAAAAGCGTGGATCATCTEST: gi|37996930|gb|CF808519.1|CF808519
genomic: ATGCAGCAAATATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTAAAgtatgctgca ... gtttctacagGGACTTGATCTTCCAGAAGTTTTAGTAGAAGTTGAAAAGCGTGGATCATCT
EST: ATGCAGCAAATATGTGGAATGAAGCCTTGAACAAACGACTTGTATCTAAA GGACTTGATCTTCCAGAAGTTTTAGTAGAAGTTGAAAAGCGTGGATCATCTEST: gi|120493628|gb|EH221795.1|EH221795
genomic: ATGCAGCAAATATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTAAAgtatgctgca ... gtttctacagGGACTTGATCTTCCAGAAGTTTTAGTAGAAGTTGAAAAGCGTGGATCATCT
EST: TATGTGGAATGAA-CCTTGAACAAACGACTGGGAA-TAAA GGACTTGATCTTCCAGAAGTTNTAGTAGAAGTTGAAAAGCGTGGATCATCT
genomic: TATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTAAAgtatgctgca ... gtttctacagGGACTTGATCTTCCAGAAGTTTTAGTAGAAGTTGAAAAGCGTGGATCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTTGCGTTATGACAATTTGGAGTCAACTTCAACCTGAATATGCAGCAAATATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTAAAgtatgctgcaatcttgtttcttgctccaatacacacacccacacttgaaaaaggagaaataattttatttcttgatcagaaaatgtattataattaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaagg