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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGCACTTCACATGGCAGTGGAAGCTGATAATCCATATTTTCGATTGGGTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatgctaaattataccacttaatagttcatgttgatgattccgttgtttaattctacaaatctgatcgcaatttggtgattttggcatgaatatatatgcag

Basic information

species Glycine max
transcript GLYMA14G02500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02500.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g67520.2 (Oryza sativa), 5'ss of exon 3
CCTTGCACTTCACATGGCAGTGGAAGCTGATAATCCATATTTTCGATTGGGTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatgctaaattataccacttaatagttcatgttgatgattccgttgtttaattctacaaatctgatcgcaatttggtgattttggcatgaatatatatgcag
 |||||  |  |  | |||   |||||  |  ||||||  ||  || | |||||||||||| |||||| ||| ||||| || || ||||| |||||||||||  |||     |  | ||| |  ||                  | ||||    ||| |||| |  ||| ||       || || ||    ||| |||   ||     
ACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCAGgt--tgg---tcatgtcataactttt------------------tcccgtgtcctaactctaaatttcttatgatgtcctgctg-ttgacacattaattcgtag----

upper sequence: GLYMA14G02500.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26850.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTGCACTTCACATGGCAGTGGAAGCTGATAATCCATATTTTCGATTGGGTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatgctaaattataccacttaatagttcatgttgatgattccgttgtttaattctacaaatctgatcgcaatttggtgattttggcatgaatatatatgcag
 |||||| |||||||||| |  || |||| ||||||||| ||  || | ||||||||||| |||||||||||||| || || || ||||| ||||| ||||||    || | ||| |   |||   |  |   | | || |   || | |  | |||         |||||| |   ||||||| |  | |  |    | | |     
GCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGgtat---atccaaaagtgatcca---agcataaccttttcacccttgc-tcatctaagatgtttgttctgattgt--tttggtggtgattgtttttggaaacag----

upper sequence: GLYMA14G02500.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55120.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTGCACTTCACATGGCAGTGGAAGCTGATAATCCATATTTTCGATTGGGTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatgctaaattataccac-----ttaatagttcatgttgatgattccgttgtttaattctacaaatctgatc--gcaatttgg--tgattttggca--tgaatatatatgcag-----------------------------------------
 ||||| ||||| ||||| |  ||||| |||||||| ||||| ||| | || ||||||||| | || ||||| || |||||||||||||||||||| ||||||         ||||  | | |      || |||    ||     | | |  ||| |  ||||||  |||||  ||   ||||  ||   |||       |  |||||       |                                           
GCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGgtaaacagaatcaaatagttcgaaatttgtttataaccaatcggttttaatttgttatg-aattctcgaaatcgaataaagcaacatgaactgaaccaaataactgaatgctctcacctttatactattgtgatatttatggagattctacttggaacag

upper sequence: GLYMA14G02500.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g01000.t01 (Vitis vinifera), 5'ss of exon 5
CCTTGCACTTCACATGGCAGTGGAAGCTGATAATCCATATTTTCGATTGGGTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatgctaaattataccacttaatagttcatgttg-atgattccgttgtttaattctacaaatctgatcgcaatttggtgattttggcatgaatatatatgcag
 ||||| ||| ||||||| |||||||| |  ||||||||||| || |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| |||||         |  |    |||  | ||  |      ||| |  ||    |||  |   |     |||   ||   ||||   | | |||      || |         
GCTTGCCCTTGACATGGCTGTGGAAGCAGGAAATCCATATTTCCGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAACCACCTTCACTTTCAGgtttct----ttccacctcacctttgaactgcaatcattgtactataaaattggctccattggttaatgaaatatgaattccataactttcatggtaacag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10234213|gb|BE803101.1|BE803101
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|18040453|gb|BM308747.1|BM308747
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|308222718|gb|HO760628.1|HO760628
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|19346233|gb|BM891113.1|BM891113
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|4303996|gb|AI443556.1|AI443556
EST:     CAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: CAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|13789523|gb|BG652114.1|BG652114
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTNNNNNN
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|11687442|gb|BF595118.1|BF595118
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATATGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|21994685|gb|BQ786213.1|BQ786213
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|19346232|gb|BM891112.1|BM891112
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|151406689|gb|EV276504.1|EV276504
EST:     TTACAACAGTTTTGGGTACTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAAGCCCCCACTAAGAAA
genomic: TTACAACAGTTT-GGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|7686123|gb|AW756771.1|AW756771
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|9204579|gb|BE330803.1|BE330803
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|9203876|gb|BE330100.1|BE330100
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
EST: gi|10234196|gb|BE803084.1|BE803084
EST:     GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAG                         GCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA
genomic: GTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatg ... atatatgcagGCTTATTATTTGGCTCTGCCCTTCCCAATTGAGAAGGCCCCCACTAAGAAA