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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGATACTTGATCAGTGATTGCTGTGTGGTTCTAGGAAAGgtaaatcttaatgttttgatgtatgaacagattgtgaccatttgaattaatgttacatgggccttttcacttgttgctttaattttttggttcctccatg...

Basic information

species Glycine max
transcript GLYMA14G02410.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55130.1 (Arabidopsis thaliana), 5'ss of exon 6
ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGATACTTGATCAGTGATTGCTGTGTGGTTCTAGGAAAGgtaaatcttaatgttttgatgtatgaacagattgtgaccatttgaattaatgttacatgggccttttcac----ttgttgctttaattttttggttcctccatg------------------------------------
||||||||| ||||| ||||| || |||||| |||| | ||| ||| ||||||||||||| |||||  |  |||||||||| ||||   || || |||  | |    | ||     |  |    | |  || ||| || |   ||  |     || |    | | |||| | |   | |  ||                                    
ATATGATATCATAGTCGATGCGACTGATAATCCTCCAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAGgtgaatc---attttctgaactctctgtatatac--gctgtaaacaatggtgatacctgagtacttcaatagaattatgtagtcagttttataggcac-cggtgttgagtattgactgagcgtttgtactttgtatacag

upper sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g01020.t01 (Vitis vinifera), 5'ss of exon 6
ATATGATATAATAGTAGATGCAACAGATAATGCTCCTACCCGATACTTGATCAGTGATTGCTGTGTGGTTCTAGGAAAGgtaaatc--ttaatgttttgatgtatga-acagattgtgaccatttgaattaatgttacatgggccttttcacttgttgctttaattttttggttcctccatg
||||||| || |  | ||||||||||||||||  |||| ||| ||| |||| ||||||||||| || ||  |||| |||||||||   | | |||  || | | |     ||||  |    |    | | | | |||  |   | |  | |        ||||   || ||   | |  |  
ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATAAGTGATTGCTGCGTTGTATTAGGGAAGgtaaattggtcattgtgctgctttctcttgtagataattgt-acagaagtcactatta-gtaaacttactaaaactggattttagcattatgtaacatagaa-