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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag

Basic information

species Glycine max
transcript GLYMA14G01290.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g25734.2 (Oryza sativa), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttg-atatatccatcatattgacaaatgt---atttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag
||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| || || ||||||||   |  | ||||  | |  |   |     |||  | | |   |||| ||  ||     ||| |  || |  |  |||||   | |    |     || | |   |||||
AAGCTTACTTGTATGATGGTTACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTGGGAATAACGAAAAAGCCTGTACCAGATTTCAGgtatgctttcaatttttacaccttgctgtggctgaagattatggaatttgaagcatgtgaatttataattgtc-tccttatgatataaaatataccatcaaaatatctgcag

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g12660.2 (Oryza sativa), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag
|||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||  |||| || ||||| || |||||||| || || ||||||  |    ||||      | |||  |    |||| | || ||  |  |  |||  ||   | |    | | |   | ||  || |        |||||  |||||
AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATAGAGGCATTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggtttacattt------tgcatggtgaaaacaagt-tacttttaaaagggtgcatttctgctgaattttcttcctatttttgagcaaacat-tattgtgtgcag

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G106213_T02 (Zea mays), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgttta--tgtgttcatgcgttttggcatattgattgcag
|||||||||| |||||||| ||||||||||| |||||||| || || || || |||||||||||  ||||||| ||||| |||||||| || || || |||||  | |  | |   | || || | ||||  |  ||   | || ||||        ||| | | |||     |||  | || |||  | || ||  |||  |       
AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATTGAAGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgta--tggtttgt---acatgtcta-cataaagttaag-atgttgcaat--------tttctagatctaccacttacctttgatcaaacattctg-tatacag-------

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G163437_T03 (Zea mays), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattg----acaaatgtatttcaatgatagtgttttgtggttc-tgatgtttatgtgttcatgc-gttttggcatattgattgcag----------
| |||||  | |||||||| || |||||||| ||||||||||| ||||| || |||||||||||  ||||||| ||||| |||||  | || || ||||||||   |||  ||||    |   ||   |  ||    | |||  ||   |   |   | || |      |  | || |  ||  || | ||| | ||| || | |   ||  |           
AGGCTTATCTATATGATGGTTATTGGGAAGATATTGGTACAATTGAGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgta---tgcacattttcacttctcactgtgctgcagtagaaagttacaacgccgcatgcgtgtcaaatcttataatttcaattagtccctgctgatttagcgtttcccttcaatctgaatacag

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgc-gttttggcatattgattgcag----------
| |||||  |||||||||| ||||||||||| || ||||| || | ||| || |||||||||||  ||||||| ||||| |||||  | || || ||||||||   |  |  ||     | | |  ||  |||  |  || |   |        | |   ||  ||   || |  ||  |||| | | | ||| |  |     ||  |           
AGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATTTCAGgtatgctttcacttctcactgtgctgca-gttggaagttgcaacgctgcatgcatatcaagtc-ttacaatttcaattagttcctactgatttagtgttccccttaaatctgaatacag

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaatt----gcctatttga---tatatccatcatattgacaaatgtatttcaatgatagtgttt--tgtggttctgatg---tttatg-tgttcatgcgttttggcatattgattgcag
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||| |||| ||||| || ||||| ||||| || ||||||||  ||    ||| ||  ||   ||||      || ||||    |||    || |     |  ||       ||||||||   |||||| | || ||  | ||| | |  |  |||||||
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATTTCAGgtagttttacagcccatcagactgtatactgtgaattttgatctctgttcaacagtttctttcattaccacatttctgatgcagtttatgatattaatatggttttgaacttaaattgcag

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcct---atttgatatat------ccatcatattgacaaatgta-----tttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgat--tgcag--------------------------------------------------------
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| || || ||| |||| |||||||| ||||| ||||| || ||||||| | | |||    ||| |||  ||      | ||| |||||  |  || |      ||  |||| ||  |    ||    |    |||   |  |      || |    ||   ||  || ||                                                        
AAGCGTACTTGTATGATGGCTACTGGGAAGACATCGGTACTATCGAGGCTTTCTACAACGCGAATTTGGGCATCACCAAGAAGCCCGTGCCAGATTTCAGgtgagtagccagcaattagatgaattaaattcaatcgtattgtgatctgcaagttccttttatgacagcctcccttgaacttcgccttttgctaattgcttattattatttaggtatgctgtaggataatccactaaagcaatcattttttcgttaacatgctgctttttgcctcttcag

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S239_45V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatg---tgttcatgcgttttggcatattgattgcag
|||| ||||||||||| |||||||||||||| ||||| || ||||| || ||||| ||||||||  | || ||||| || |||||||| ||||||||||||| |    |    | || ||    |   ||  ||||||| ||   | | |  |  | ||  |   |    | | || |    | | ||  | ||   |||  |        
AAGCCTACTTGTATGACGGCTACTGGGAAGATATTGGAACTATCGAAGCCTTCTACAATGCAAACTTAGGCATCACGAAGAAGCCTGTTCCTGACTTCAGgtgagc-actcggtaga-atgatgaatgtaa-gacaaatatacagctagggcaacgcttcttatattccctctctaggaaccgcttatatgattactcattct--------

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 5'ss of exon 5
AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttct-gatgtttatgtgttcatgcgttttggcat--attgattgcag
||||||| ||||| ||||||||||||||||| ||||| || || || || ||||| ||||| |||||||| ||||| || || ||||| ||||| ||||||| | ||  ||   |  | ||||  |||||     || | |  |  |    | || | |  |  |  | ||  | | || ||| |   |  |||  ||  | ||| |    
AAGCTTATTTGTACGATGGCTACTGGGAAGATATTGGAACTATTGAAGCATTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAGgtgagttatcttccttct-tatctctcata-----aattctgctctaggctttgt-tctaataatggtagaaatgtgtgcgttaacttggcttgttatcgactgact----

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ09564 (Selaginella moellendorffii), 5'ss of exon 4
---AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatg-tatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag
   |||| ||| ||| |||||| |||||||| || ||||| |||||||||||||| || ||||| ||  | ||| | || || |  |||   ||||| || ||||  |   |   |||   |  |   || |||  | |  ||      || |  | |  |||||    || |                                       
TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCT---CCTGAATTTAGgtgca---caagttttcaaggtttttcttatcaatacttgacgggacattcgtggaattttgcttctcag---------------------------------------

upper sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ18043 (Selaginella moellendorffii), 5'ss of exon 5
---AAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcctatttgatatatccatcatattgacaaatgtatttcaatgatagtgttttgtggttctgatgtttatgtgttcatgcgttttggcatattgattgcag
   |||| ||| ||| |||||| |||||||| || ||||| |||||||||||||| || ||||| ||  | ||| | || || |  |||   ||||| || ||||  |   |   |||   |  |   || |||  | |        |  | |  |   |  ||   || ||||  | |                                
TACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCCT---CCTGAATTTAGgtgca---caagttttcaaggtttttcttatcaata-------cttgacgggacattcgtggaattttgattctcag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494929|gb|EH223096.1|EH223096
EST:     GCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACTATATTTGCCTCC
genomic: GCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|22522873|gb|BU081684.1|BU081684
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|15287005|gb|BI470896.1|BI470896
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|10238679|gb|BE807567.1|BE807567
EST:     GGCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|17518996|gb|BM188038.1|BM188038
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|51335512|gb|CO979378.1|CO979378
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|10232477|gb|BE801365.1|BE801365
EST:     AAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: AAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|5770728|gb|AI973902.1|AI973902
EST:     CAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: CAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
EST: gi|7640498|gb|AW734799.1|AW734799
EST:     TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAG                         TTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC
genomic: TTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACTTCAGgtaaattgcc ... ttgattgcagTTTCTATGATCGTTCATCTCCAATCTACACCCAACCACGATATTTGCCTCC