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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttggaatcttgtttctccttttccctaaagttttaagttgtgattgaaaaattgaagaaatgctattgtttttag

Basic information

species Glycine max
transcript GLYMA13G43050.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207697981|gb|GD681046.1|GD681046
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|208234357|gb|GE034506.1|GE034506
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGCAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|208329805|gb|GE128838.1|GE128838
EST:     TGAAAGAAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         T-GGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: TGAA-GA-GGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|22928435|gb|BU545574.1|BU545574
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|193355500|gb|FK322157.1|FK322157
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|192297031|gb|FG990317.1|FG990317
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|302141315|gb|HO212191.1|HO212191
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|193677010|gb|FK618762.1|FK618762
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGGAGTAAGCAAGACAAGATACCCCTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|192308530|gb|FK002426.1|FK002426
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|193510942|gb|FK468882.1|FK468882
EST:     AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCC                         TTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: AGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
EST: gi|13312662|gb|BG406313.1|BG406313
EST:     GAAGAGGCTACGAGTGTTGAAGAAGTTCTGAGCCTTTCTGGCTTTTACCC                         TTGGCAGTNAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG
genomic: GAAGAGGCTACGAGTGTTGAAGA-GTTCTGAGC-TTTCTG-CTTTTACCCgtgagttgga ... ttgtttttagTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGAACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCgtgagttggaatcttgtttctccttttccctaaagttttaagttgtgattgaaaaattgaagaaatgctattgtttttag

- - - - - - - -  TGAAGA
- - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGCTT