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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataaacactgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt...

Basic information

species Glycine max
transcript GLYMA13G42630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g19930.1 (Oryza sativa), 5'ss of exon 5
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataaaca-ctgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt---
|    || ||||| |||    |  | ||||| || ||||||||||||||||||   || ||||| || |||||||||||||| || |||||||||||||||||  || | | || | | ||  | ||   | |   | |    | |||  || |    |||   |  | |  |  ||||        | |  |||  || |   
ACCGTGTGCTTGGAGTTTCAGGCGTCCGTGTAGTCGATGGCTCAACATTTTCTAGATCACCAGGGACGAACCCTCAAGCCACGGTCATGATGATGGGCAGgtacataaacacagtaaaaaattaacttctttagtctttacctaatgatattctaactttaaactcttaaagactaaattgcttccctcatatttcatactcag

upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g31030.1 (Oryza sativa), 5'ss of exon 5
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacata-aacactgagtaaacatct-ttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt
|    ||  |||||||     | ||||||||| | ||||| || || || | |  ||| |||||||||||||| |||||||| || |||||||||||||||||    || | | ||  || |  |||        ||||     ||| | |||      ||  | ||  |     ||  | ||   | | |   | || || 
ACCGTGTGATTGGTGTCTCAGGCCTTCGTGTGATCGATGGGTCGACCTTATTTAGGTCACCAGGAACCAACCCGCAAGCCACAGTCATGATGATGGGCAGgtaaaggcaaaaacaaactatagtactctcctttaatctacaaaattaaatttcaagggttgatctttcttttgtca--tattgtctttca---tggtcag-

upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G081841_T01 (Zea mays), 5'ss of exon 5
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtat-gtacatagagaacataaacactgagtaaacatctttggattgacttttttttattattattattacc-agcaaatgttaattatgagttttgttagt
|   ||| ||||| |||    | || || |||||||| ||||||| ||||||| | |||||||| |||||||||||||| || || |||||||||||||||||  |||| |     |  | ||   |   |      ||    |   | |||    | | | | |    ||  |  |  | ||  |  |   |||||||   
ACCGGGTGCTTGGAGTTTCAGGTCTCCGGGTGGTTGACGGCTCAATATTTTCTAAATCGCCAGGGACCAACCCTCAAGCTACAGTTATGATGATGGGCAGgtacagtacctcacacagttgaaacttccttgttttgctacaaa---agtttaaactctaagtgtagagactgaatagctttttgtcgtactttttgttcag

upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G72970.2 (Arabidopsis thaliana), 5'ss of exon 6
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataaacactgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt
  || ||||||||||| || || ||  | ||  ||||||| ||||| |||   ||||| |||||||||||||| ||||| ||| ||||||||||||| |||||  | || |   |  |  ||||   | | ||     |||||  |  ||| ||||    | | ||| |  | || | | |  || | | | ||   || 
GCAAAGTTCTTGGTGTCGACAGGCTCAGAGTTATTGATGGTTCAACGTTTGACGAGTCTCCAGGAACCAACCCGCAAGCTACTATGATGATGATGGGAAGgtaaat-caaaatcattaccaacat--aatgaa-----ttgga--ggttttctttttagttcaatat-ataaacagaggat--ttgtcaatctttgcag-

upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02210.t01 (Vitis vinifera), 5'ss of exon 5
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataaacactgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt
||||||||||||||||  | || || || ||  ||||||| ||||| |||   ||||| ||||| || || |||||||| ||||| ||||||||||||||||| |  |||     | ||    |   | ||||       | |     | ||       | | | ||| |       || ||  | ||            
ATAAGGTTCTTGGTGTGCACAGGCTCCGAGTAATTGATGGTTCAACGTTTAGGGAGTCACCAGGCACTAATCCTCAAGCGACTGTCATGATGATGGGCAGgtaagatcattacctatatgtttag-aaataaatgaacccgaacca--tcttcaaagaaaatgtaatttcttttgg-tgatatgtgtgcag---------

upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ07664 (Selaginella moellendorffii), 5'ss of exon 3
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataaacac-tgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt
    |||  | |||||  |||  || || || || ||||| || || |||      || |||||||||||||| ||||| ||||| ||||||||||| ||| | |||            |    | |  |     |||| | |  | |||  | |  |                                           
----GGTCATCGGTGTGAATAACCTCCGAGTCGTAGATGGATCGACGTTTCTGTCATCTCCAGGAACCAACCCGCAAGCTACTGTCATGATGATGGGAAGGCAAgtaagctccctttccagttgcatccgactgaatctctag--taactcgtctgcag------------------------------------------

upper sequence: GLYMA13G42630.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ07720 (Selaginella moellendorffii), 5'ss of exon 3
ATAAGGTTCTTGGTGTTGATAGACTTCGTGTGGTTGATGGCTCAACATTTTCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacatagagaacataa--acactgagtaaacatctttggattgacttttttttattattattattaccagcaaatgttaattatgagttttgttagt
    |||  | |||||  |||  || || ||  | ||||| || || |||      || |||||||||||||| ||||| ||||| ||||||||||| ||| | |||            |    ||  |     | |||| | |  |||||  | |  |                                           
----GGTCATCGGTGTGAATAACCTCCGAGTCATAGATGGATCGACGTTTCTGTCATCTCCAGGAACCAACCCGCAAGCTACTGTCATGATGATGGGAAGGCAAgtaagctccctttccagttgcatcggactga-atctctag--tgactcgtctgcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305578|gb|CD390781.1|CD390781
EST:     TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAG                         GTACATGGGACTGAAGATTTTAAGGCACAGGCTGGGGAAATTGGCTGGTAT
genomic: TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacat ... tttttcgcagGTACATGGGACTGAAGATTTTAAGGGACAGGCTGGGGAAATTGGCTGGTAT
EST: gi|31476181|gb|CD418209.1|CD418209
EST:     TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAG                         GTACATGGGACTGAAGATTTTAAGGGACCGGCTGGGGAAATTGGCTGGTAT
genomic: TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacat ... tttttcgcagGTACATGGGACTGAAGATTTTAAGGGACAGGCTGGGGAAATTGGCTGGTAT
EST: gi|208255002|gb|GE056602.1|GE056602
EST:     TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAG                         GTACATGGGACTGAAGATTTTAAGGGACAGGCTGGG
genomic: TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacat ... tttttcgcagGTACATGGGACTGAAGATTTTAAGGGACAGGCTGGG
EST: gi|6718788|gb|AW306435.1|AW306435
EST:     TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAN                         GTACATGGGACTGAAGATNTTAAGGGACAGG
genomic: TCTGAGTCGCCAGGAACCAACCCTCAAGCCACTGTGATGATGATGGGCAGgtatgtacat ... tttttcgcagGTACATGGGACTGAAGATTTTAAGGGACAGG