Sequence
atgc intronic sequence ATGC exonic sequenceTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGgttagtgaaactgttgaaattaaatttaaaatattcttattgtactgcacagaagctgatgctatttatttgtttattgtttattcttttcgatacccttgtctgactataaatcatttag
Basic information
species | Glycine max |
transcript | GLYMA13G42480.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G42480.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g12850.1 (Oryza sativa), 5'ss of exon 6
TGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGgttagtgaaactgttgaaattaaatttaaaatattcttattgtactgcacagaagctgatgctatttatttgtttattgtttattcttttcgatacccttgtctgactataaatcatttag
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TGGGCGTTCTAGAGGATTTGGTTTTGTCACTTTTGAAAGTGAGGATTCTGTGGAAAGGGTTATATCAGAGGGAAGAATGCGTGACCTTGGTGGAAAGCAGgttag--aaacttctttaattgtttgcagact----ttcttgggtagttaccaacttggcgacttgtgttaaacacgtttacaatcatcatgtgcacgccttctgg---------------
upper sequence: GLYMA13G42480.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G167356_T01 (Zea mays), 5'ss of exon 6
TGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGgttag----tgaaactgttgaaattaaatttaaaatattcttatt------gtactgcacagaagctga-tgctatttatttgtttattgtttattcttttcgatacccttgtctgactataaatcatttag
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TGGGCGTTCTAGAGGGTTTGGTTTTGTCACTTTTGAAAGTGAAGATTCTGTTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttttaatttttttggtgtaaacttatgtttcacttactagtgaagtagaacaagaaagctaaatgaaatagacttagaaat-gttcataacttt-------------------------------
upper sequence: GLYMA13G42480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g02350.t01 (Vitis vinifera), 5'ss of exon 5
TGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGgttagtgaaactgttgaaattaaatttaaaatattcttattgtactgcacagaagctgatgctatttatttgtttattgtttattcttttcgatacccttgtctgactataaatcatttag
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CGGGCGGTCAAGGGGCTTTGGATTTGTCACTTTTGTGAGTGAAGATGCTGTTGAAAGGCTTTTCTCTGAGGGAAAAACTCATGAACTTGGAGGAAAAC----TGgtaaaagtct---gattgaaatcaaattatcat-----------------gccgtttctatgtttttccacattgc--agtgcttataacctgagaatttcaacataaaatattag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193344691|gb|FK310771.1|FK310771EST: CAGTGGGAAAAATACATGAAATTGGAGGCAAGCAG GTTGAGATTAAAAGGGCTGAGACCCAAAAGATCTGGAGTTGATTACTGCAA
genomic: CAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGgttagtgaaa ... aatcatttagGTTGAGATTAAAAGGGCTGAG-CCCAAAAGATCTGGAGTTGATTACTGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGgttagtgaaactgttgaaattaaatttaaaatattcttattgtactgcacagaagctgatgctatttatttgtttattgtttattcttttcgatacccttgtctgactataaatcatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG