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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgttatttttttcctgggaatttcttgacttcttgctgatgattgtgttctatttatagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag

Basic information

species Glycine max
transcript GLYMA13G42150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g01010.1 (Oryza sativa), 5'ss of exon 6
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgt-tatttttttcctgggaatttcttgacttcttgctgatgattgtgttctatttatagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag
||||||||||| ||||| |  ||  | |||||| | ||||||||||||||||| ||||| || |||||||||||||||||||| || ||||||||||||||| |||   | |    |     ||||   || || ||     |  | ||   ||| | |   | |   | ||      | ||| || |                               
AGTCATCTTGATTTCTATGGAGAATCAAGAAATATGGCTAGGATGTCAGATATACTTGCAGTTTATGCATGGGTTGATCCTTCCACCGGGTATTGCCAAGgtatatgcatatttcagtggcatctt---tttttact-----tcctttttggtttcttgatgtgtctaaatgggataagttgctaacag------------------------------

upper sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G031043_T01 (Zea mays), 5'ss of exon 7
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgttatttttttcctgggaatttcttgacttcttgctgatgattgtgttctatttatagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag
|| || ||||| ||||| |  ||  | || ||| | ||||| ||||| ||||| |||||||| |||||||||||||||||||| || || || || |||||||    | || |  |||   |    | ||  | ||  |  |||  |  | || ||    |||  |  || | |    ||                                      
AGCCACCTTGATTTCTATGGAGAATCAAGGAATATGGCTAGAATGTCTGATATACTTGCTGTTTATGCATGGGTTGATCCTTCCACTGGATACTGTCAAGgtttgcatatttcgaggagcctt---attttgtactattatttgattattcttgatgtatctaaaattctaagtaattatag------------------------------------

upper sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G43490.2 (Arabidopsis thaliana), 5'ss of exon 6
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgttatttttttcctgggaatttcttgacttcttgctgatgattgtgttctatttatagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag
|| || ||||| || || |||||  |  ||||| |||  || ||||| ||||| ||||| || ||||| |||||||||||| |||| || ||||||||||||    | | ||     | |||  | ||||     || ||||  ||     |||||       ||  | ||  |  |||| | ||       || |    |   | |  ||||  |||
AGCCACCTTGAGTTTTATGAGGATCCAGGAAATCTAGGAAGAATGTCGGATATCCTTGCGGTTTATGCTTGGGTTGATCCTGCAACTGGTTATTGCCAAGgtgccatatatctcttaagtttgataacttagatatg-tgat-atgaaaactttatgac---gttttattggtttaggatactaa-------ctctctggttgcaaatctgttgatag

upper sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G59570.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgtt----atttttttcctgggaatttcttgacttcttgctgatgattgtgttctatttatagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag
|| || ||||| ||||| |||||  |  ||||| ||| ||| ||||||||||| ||||| |||||||| |||||||||||| |||| || ||||||||||||     || | | |  ||     ||  | || | ||    |  |  | | ||    |||       | | ||| |    |||| | ||    |||||  |  |      |  |||    ||
AGCCACCTTGAGTTCTATGAGGATCCAGGAAATCTAGGTAGAATGTCAGATATCCTTGCGGTCTATGCTTGGGTTGATCCTGCAACTGGTTATTGCCAAGgtcccaaatctctcttgtgttgggtttgtaacgtgttataaa--acggcgctc---gtatgagt---tcatactaatgtaggatactaa---ctgtctggttgc----gaatctgtggacag

upper sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0226g00160.t01 (Vitis vinifera), 5'ss of exon 6
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgt--------tatttttttcctgggaatttcttgacttct-tgctgatgattgtgttc-----------tattta---tagtcctattacactgactctggatgccaaaacttgtcttttcactgaaatacttgtttttag
||||||||||||||||| |||||  | | |||||| |||||||||||||| ||||||||||| |||||||||||||||||| ||||||| || |||||||||        ||| ||| |  | | |  |  |  | || | || | |  ||| | |||           ||  ||   | ||  | | | |    || |  |  ||||   ||   | |    ||||||   || | ||||
AGTCATCTTGAATTCTATGAGGATCCAAAAAATTTGGCTAGGATGTCAGACATTCTTGCTGTTTATGCATGGGTTGATCCTGCAACAGGATACTGCCAAGgtggtgcctttatctttctgtttgaacctcttccagttgtatgataactattttattcatggaaagctctagataatttggttttgtaatatcagct-taaacaccaatggttacttgtgacttgaaat--ctgctcttag

upper sequence: GLYMA13G42150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0226g00020.t01 (Vitis vinifera), 5'ss of exon 2
AGTCATCTTGAATTCTACGAGGACACGAGAAATTTAGCTAGGATGTCAGATATTCTTGCTGTCTATGCATGGGTTGATCCTTCAACAGGGTATTGCCAAGgttattttttt-----cctgggaatttcttgacttcttgc-tgatgattgtgttctatttatagtcctattac--actgactctg-gatgccaaa-acttgtcttttcactgaaatacttgtttttag
|||||||||||||| || ||||| || | ||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||| || |||||||||| ||  |||       |||      |||  |   |||    |||||| | ||||   |  |   | ||  |    | | | ||  ||  ||   ||   |  ||  | |     |  |  | ||||
AGTCATCTTGAATTTTATGAGGATACAAAAAATTTAGCTAGGATGTCAGACATTCTTGCTGTTTATGCATGGGTTGATCCCGCAACAGGATACTGCCAAGgttgttcctttgtctttttggttgaaccttttccagttgtacaatgattattttcttcatggaaatccatagctggttaattttgtaatatcagctacaattacttataatttggaatcttctcttag