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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgtactaatttatttttcttacaaaagctgatcttgttcttggttgtcttaagatgtagtatatgcatttctgattgtcttaaaaggaggtgttcaatgct...

Basic information

species Glycine max
transcript GLYMA13G41600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 5
AACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgtactaatttatttt-tcttacaaaagctgatcttgttcttggttgtcttaagatgtagtatatgcatttctgattgtcttaaaaggaggtgttcaatgct--
|| || |||||||| || ||||| || ||||| || ||||||||||||| ||||||||||||||| || || |||||||| || || || ||||| ||||||| ||  |  |    |  ||    |  | ||  || ||||   | |    |     ||   |||||    |  |||| |||     |  ||    ||| |  
AATCCCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGCAGAGATGGCAAAAGCTATAGTACAAACTTGGCCTTCACCCCGCCAGAATACTTGAGAACAGgtaatagctagtggaatgctatgtgatgttataatgatctt--cttttcacatgcaaagggcatgcagcattatttgttttattgccat-tgcagtatgttaa

upper sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S122_66V6.1 (Physcomitrella patens), 5'ss of exon 5
AACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgtactaattt-----atttttcttacaaaagctgatcttgttcttggttgtcttaagatgtagtatatgcatttctgattgt-cttaaaaggaggtgttcaatgct
 | ||  | |||||||||||||| |||||||| |||||  | ||||| | |||||||||||| ||| | || | ||| || ||||| || || || || |||||  |  |     || |||  |   |  | | ||       || ||| |  | |  |  | | |      ||||||   | |||   |     | ||  |    
GATCCGCGCCTCTCTTGTTTTGGCCTCATGAAGAACAGTCGCGATGGAAAAAGCTATAGTACCAATCTGGCCTACACTCCCCCTGAATACTTAAGAACTGgtaccgaaatcctgaatgttttgttggattgtttattgaacaatttgttattgttactttcaatttgcatcattctgacgattcttggtacttcattttgcag---

upper sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 5
AACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgta--ctaatttatttttcttacaaaagctgatcttgttcttggttgtcttaagat--gtagtatatgcatttctgattgtcttaaaaggaggtgttca-atgct----------------------------------------
 ||||  | ||||| |||||||| |||||||| |||||||||||||| | |||||| || || ||| | |||| ||| || |||||||| || || |||||||  | |   | |   |||| |   | |  || ||    |  |    ||  | ||  | | | | |    |  | | ||| |  |       |||    |||||                                        
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGGAAAAGCTACAGCACCAATCTGGCTTACACTCCTCCTGAGTACTTAAGAACAGgtatcccacggtttccctctttctggatcgaatatt----tgagcaacctggaaattagcaatttctattatgttaaatgtatgcatgcataatgtatgcatgcttctctttggtacgtgacaaatgtcataagagggtttgcag

upper sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 5
AACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgt-actaatttatt------tttcttacaaaagct--------gatcttgttcttggttgtcttaagatgtagtatatgcatttctgattgtcttaa--aaggaggtgttcaatgct------------------------------------------------------
 ||||  | ||||| |||||||| |||||||| |||||||||||||| | |||||| || || ||||| |||| ||| || |||||||| ||||| |||||| |  || || ||       ||||   || ||||         ||  ||   | | |    ||  |   | |||    |  |  | | || || |   ||   |  |   ||  ||                                                      
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGAAAAAGCTACAGCACCAATTTGGCTTACACTCCTCCTGAGTACTTGAGAACAGgttaacaactttttgggcatcttctgggaagagcttgtgagggaatggtgggttagctatatttttgtcttcgtaagatcgatgttcactgcctaagtcaatcggtcgaggaaccctggaactcccgtgattctgtttggtcagtgacggtcatttttcgatattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022402|gb|BM093436.1|BM093436
EST:     AAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAG                         GAAGAATCACCCGAGAAAGTGTAATATACAGTTTTGGCACACTCTTGCTTG
genomic: AAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgtactaattt ... aatttggcagGAAGAATCACCCGAGAAAGTGTAATATACAGTTTTGGCACACTCTTGCTTG
EST: gi|12689388|gb|BG155785.1|BG155785
EST:     AAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAG                         GAAGAATCACCCGAGAAAGTGTAATATACAGTTNTGGCACACTCTTGCTTG
genomic: AAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgtactaattt ... aatttggcagGAAGAATCACCCGAGAAAGTGTAATATACAGTTTTGGCACACTCTTGCTTG
EST: gi|6747735|gb|AW318191.1|AW318191
EST:     AAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAG                         GAAGAATCACCCGAGAAAGTGTAATATACAGTTTTTGG-ACACTCTTGCTT
genomic: AAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGgtactaattt ... aatttggcagGAAGAATCACCCGAGAAAGTGTAATATACAGTTTT-GGCACACTCTTGCTT