1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGGTCTGAAAGTTATAGCATGCATTGGGGAAACTCTTGAACAGCGTGAAGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagctttttttctccatataaacaggtttaattttgtgcatattcattaagtcgtgtttttatctctcagatttgttcacaaatgctgttaggaggtct...
species | Glycine max |
transcript | GLYMA13G41120.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|208180403|gb|GD977608.1|GD977608
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|6071447|gb|AW100834.1|AW100834
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAANATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGNGEST: gi|18040397|gb|BM308691.1|BM308691
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|193542030|gb|FK494504.1|FK494504
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|207707167|gb|GD687645.1|GD687645
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|193513329|gb|FK470093.1|FK470093
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|207830106|gb|GD801462.1|GD801462
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|208279834|gb|GE078464.1|GE078464
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|10843979|gb|BF067325.1|BF067325
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|207698002|gb|GD681067.1|GD681067
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTEST: gi|192308239|gb|FK002751.1|FK002751
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTT
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGAEST: gi|193390433|gb|FK356409.1|FK356409
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATEST: gi|208184964|gb|GD981170.1|GD981170
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAAT
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|208308523|gb|GE102923.1|GE102923
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCG-TTTGGCCTATGAGCCAGTTTGGGEST: gi|192300263|gb|FG987840.1|FG987840
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|193308287|gb|FK277292.1|FK277292
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|37997347|gb|CF808936.1|CF808936
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGEST: gi|151409950|gb|EV279758.1|EV279758
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|208308386|gb|GE110122.1|GE110122
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGEST: gi|193508667|gb|FK465823.1|FK465823
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
EST: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAG CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagcttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTCTGAAAGTTATAGCATGCATTGGGGAAACTCTTGAACAGCGTGAAGCTGGTACAACAACGGCTGTTGTTGCTGAGCAAACAAAAGCAATTGCAGgtagctttttttctccatataaacaggtttaattttgtgcatattcattaagtcgtgtttttatctctcagatttgttcacaaatgctgttaggaggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA