1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGgtatattttatacaagctactaattattacactctgttatgttattctttctctgggaaaatttgcatgtctttaatttcagaaatcaaaacagtgcaaa...
species | Glycine max |
transcript | GLYMA13G40130.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAG TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTEST: gi|192331238|gb|FK020977.1|FK020977
genomic: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGgtatatttta ... tgtgttgcagTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
EST: CTTTCAAGGGAAAG TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTEST: gi|192327041|gb|FK015208.1|FK015208
genomic: CTTTCAAGGGAAAGgtatatttta ... tgtgttgcagTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
EST: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAG TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTEST: gi|21285376|gb|BQ473247.1|BQ473247
genomic: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGgtatatttta ... tgtgttgcagTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
EST: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAG TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTEST: gi|21285317|gb|BQ473188.1|BQ473188
genomic: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGgtatatttta ... tgtgttgcagTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
EST: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAG TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTEST: gi|33387977|gb|CA851184.1|CA851184
genomic: AGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGgtatatttta ... tgtgttgcagTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
EST: ACTTTGGTNCCCAGCATTTAAAGNAAGCAGCAAAGTCTTTCAAGGGAAAG TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
genomic: ACTTTGGT-CCCAGCATTTAAAG-AAGCAGCAAAGTCTTTCAAGGGAAAGgtatatttta ... tgtgttgcagTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGgtatattttatacaagctactaattattacactctgttatgttattctttctctgggaaaatttgcatgtctttaatttcagaaatcaaaacagtgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG