1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattattactagaagacttgtagtaagctttggtgtactatttctatgggactattaagatgtataataattaataaaaattagggtcagggatagtt...
species | Glycine max |
transcript | GLYMA13G36690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCACAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209711648|gb|BW671359.1|BW671359
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|193677069|gb|FK619227.1|FK619227
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGEST: gi|58017492|gb|CX704234.1|CX704234
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|192301451|gb|FG998415.1|FG998415
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACGACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|151411607|gb|EV281418.1|EV281418
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGG-ACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGEST: gi|9204958|gb|BE331182.1|BE331182
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|208049710|gb|GD847073.1|GD847073
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|151403064|gb|EV272874.1|EV272874
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGG-ACAACCTAACTTTGTGGACTTCTGACATCCCAGA-GATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGEST: gi|193487077|gb|FK450518.1|FK450518
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209725077|gb|BW659785.1|BW659785
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGEST: gi|209709690|gb|BW668226.1|BW668226
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|254316527|gb|GR828064.1|GR828064
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209703002|gb|BW656059.1|BW656059
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209725078|gb|BW659786.1|BW659786
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209705112|gb|BW653335.1|BW653335
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|17963820|gb|BM270564.1|BM270564
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAAGTGAGGATGEST: gi|213602820|gb|DB978151.1|DB978151
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: CACAGGGACAACCTAACTTTGTGGACTGAC-GACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|193665078|gb|FK612088.1|FK612088
genomic: CTCAGGGACAACCTAACTTTGTGGACT-TCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TTCTGACATCCCTAGTAAGTATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATEST: gi|208057003|gb|GD851252.1|GD851252
genomic: TTCTGACATCCC-AG-AAG-ATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAT
EST: ACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|213588202|gb|DB984261.1|DB984261
genomic: ACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: AGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACAAG-CAAGCTTGGTGGAGGTGAGGATEST: gi|209729014|gb|BW651766.1|BW651766
genomic: AGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCAC-TGCCAAGCTTGGTGGAGGTGAGGAT
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209712343|gb|BW671193.1|BW671193
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|192304319|gb|FG993575.1|FG993575
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCA-GGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|16997097|gb|BM086469.1|BM086469
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|193694954|gb|FK634340.1|FK634340
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGEST: gi|7146400|gb|AW508322.1|AW508322
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTG
EST: TCTCAGGGACAACCTAACTTTGCGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|207753749|gb|GD724229.1|GD724229
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTEST: gi|209721041|gb|BW666298.1|BW666298
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTT
EST: CAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|24205692|gb|BU964945.1|BU964945
genomic: CAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|193324892|gb|FK290190.1|FK290190
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|208279315|gb|GE073606.1|GE073606
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: CAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|10848239|gb|BF071695.1|BF071695
genomic: CAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|58022604|gb|CX709345.1|CX709345
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|6666341|gb|AW277800.1|AW277800
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TGTCAGGGACAACCTAACTGTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCNCAGAAAGTGAATGGCACTGGCAAGEST: gi|31474413|gb|CD416441.1|CD416441
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAG
EST: TCTCAGGGACTACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|209719932|gb|BW666015.1|BW666015
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGEST: gi|213588753|gb|DB984322.1|DB984322
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
EST: CCCAGAAGATGGAG AAGATGCCCAGAAAGTGAATGGCTCTGCCAAGCTTGGTGGAGGTGAGGATG
genomic: CCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattattactagaagacttgtagtaagctttggtgtactatttctatgggactattaagatgtataataattaataaaaattagggtcagggatagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa