1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCCAACGAATGTGCCTGGGCCTATGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatatcttgattatcttccattctaccttaataatataaagaaaaagaaaaaaaaaagtcaaattactttaaatatatttctcatgtgtcaataaaattggctttccataagagcggtagttgatataatattgatatttctggttttgtttatgtag
species | Glycine max |
transcript | GLYMA13G36280.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAG AATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGAEST: gi|13787959|gb|BG650551.1|BG650551
genomic: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatat ... gtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
EST: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAG AATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGAEST: gi|151404938|gb|EV274752.1|EV274752
genomic: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatat ... gtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
EST: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAG AATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
genomic: CTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatat ... gtttatgtagAATATCAAATCAGACCTAAGTTTGTGGCAGCTAGGGACATTACCTCCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAACGAATGTGCCTGGGCCTATGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAATGTTTACCATTACTGGGTTGAACAGgtatttatatcttgattatcttccattctaccttaataatataaagaaaaagaaaaaaaaaagtcaaattactttaaatatatttctcatgtgtcaataaaattggctttccataagagcggtagttgatataatattgatatttctggttttgtttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA