Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag

Basic information

species Glycine max
transcript GLYMA13G35590.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 3
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag
                                         |   | ||||||||||| |||||||| ||||| |||||||||| || |  | ||| |||  | ||  |   ||   ||||| || ||        ||  ||  | |   ||   | | |  ||  |||
-----------------------------------------ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactca--agtcacacaatgaat--cag

upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag
|||| || ||||| || || ||||| ||  | ||  | || |   | ||||||||||| |||||||| ||||| |||||||||| || |  | ||| |||  | ||  |   ||   ||||| || ||        ||  ||  | |   ||   | | |  ||  |||
CTTACTGTACTGGCCTTCTTTTGGCTCGCCGTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactca--agtcacacaatgaat--cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179265|gb|HO027736.1|HO027736
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|13181447|gb|BG352787.1|BG352787
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAAGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|38192902|gb|CF922108.1|CF922108
EST:     GAGTCCTCAAAACACTTGAAATGGATGATGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298175002|gb|HO017997.1|HO017997
EST:     GAGTCCTCAAAACACTCGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|26058921|gb|CA801835.1|CA801835
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|193550674|gb|FK508929.1|FK508929
EST:     GAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|42722709|gb|CK768608.1|CK768608
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|37993992|gb|CF805738.1|CF805738
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298185668|gb|HO030881.1|HO030881
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|209721139|gb|BW665696.1|BW665696
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213588681|gb|DB957689.1|DB957689
EST:     GAGTCCTCAGAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213593969|gb|DB961913.1|DB961913
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|15203735|gb|BI426503.1|BI426503
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|37993873|gb|CF805619.1|CF805619
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|19452678|gb|BM954088.1|BM954088
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213611688|gb|DB969076.1|DB969076
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|17153260|gb|BM143193.1|BM143193
EST:     GAGTCCTCAAAACTTTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|7326863|gb|AW620661.1|AW620661
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|15812318|gb|BI784593.1|BI784593
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|8282845|gb|BE020406.1|BE020406
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|192305243|gb|FG993981.1|FG993981
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|7590367|gb|AW706121.1|AW706121
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|209711827|gb|BW674087.1|BW674087
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|9900404|gb|BE609372.1|BE609372
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCATTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213608827|gb|DB957191.1|DB957191
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|23727797|gb|BU761934.1|BU761934
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|18733428|gb|BM527602.1|BM527602
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|254328305|gb|GR835270.1|GR835270
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298195414|gb|HO039245.1|HO039245
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGA
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGA
EST: gi|6072796|gb|AW102183.1|AW102183
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|254332683|gb|GR844053.1|GR844053
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|163921337|gb|EH039759.1|EH039759
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|13312780|gb|BG406431.1|BG406431
EST:     TATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: TATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298177039|gb|HO023400.1|HO023400
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|19269197|gb|BM885453.1|BM885453
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|20498035|gb|BQ272965.1|BQ272965
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|46492910|gb|CN472466.1|CN472466
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCG
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCG
EST: gi|8284697|gb|BE022239.1|BE022239
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|23731241|gb|BU763733.1|BU763733
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|13562903|gb|BG551123.1|BG551123
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|254331588|gb|GR846005.1|GR846005
EST:     GTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|14125882|gb|BG790320.1|BG790320
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|4286000|gb|AI440984.1|AI440984
EST:     AGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAAATGTTGAG                         GCTACTGGAGAGGATTATTTCAGTGGAACCTGCCGAGAGCAGGAG
genomic: AGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAA-TGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATT-CAGTGGAACCTGCCGAGAGCAGGAG
EST: gi|192318939|gb|FK006835.1|FK006835
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAATATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|38192978|gb|CF922184.1|CF922184
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|11412751|gb|BF424762.1|BF424762
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213607717|gb|DB958736.1|DB958736
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|209710634|gb|BW671006.1|BW671006
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|7326861|gb|AW620659.1|AW620659
EST:     GAGTCCTCAAAACACTTGAAATGGATGAAGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|18692881|gb|BM521729.1|BM521729
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|9440322|gb|BE440829.1|BE440829
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|15812394|gb|BI784669.1|BI784669
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|254316214|gb|GR827751.1|GR827751
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298183188|gb|HO028451.1|HO028451
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|48575154|gb|CO036261.1|CO036261
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|17022274|gb|BM093308.1|BM093308
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|18040880|gb|BM309174.1|BM309174
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|208298056|gb|GE091031.1|GE091031
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213614228|gb|DB956812.1|DB956812
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|24205594|gb|BU964847.1|BU964847
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|193626317|gb|FK572681.1|FK572681
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|18041137|gb|BM309431.1|BM309431
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|209716540|gb|BW653902.1|BW653902
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298183179|gb|HO028442.1|HO028442
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213601355|gb|DB956675.1|DB956675
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGANATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298183338|gb|HO028551.1|HO028551
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAG
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAG
EST: gi|254320081|gb|GR830997.1|GR830997
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAG-AG-CCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|209710047|gb|BW681039.1|BW681039
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGANATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAG
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAG
EST: gi|208306628|gb|GE106695.1|GE106695
EST:     AGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: AGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|254319372|gb|GR828992.1|GR828992
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|6070850|gb|AW100237.1|AW100237
EST:     GAGTCCTCANAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|298185362|gb|HO030575.1|HO030575
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|213617258|gb|DB972896.1|DB972896
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|208340211|gb|GE135787.1|GE135787
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|7590322|gb|AW706077.1|AW706077
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
EST: gi|26267787|gb|CA818850.1|CA818850
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA