Sequence
atgc intronic sequence ATGC exonic sequenceCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag
Basic information
species | Glycine max |
transcript | GLYMA13G35580.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 3
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag
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-----------------------------------------ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactca--agtcacacaatgaat--cag
upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag
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CTTACTGTACTGGCCTTCTTTTGGCTCGCCGTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactca--agtcacacaatgaat--cagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6072732|gb|AW102119.1|AW102119EST: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG GCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatca ... tttatttcagGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatcagtttgctttgctgtttgtgccaaagtgcatttttttttctcagcattgtaatttaattggttgtatattttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA