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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGTTGGTGTTGGCGAGGCTTCATTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAGgtttgttcctttcccttggatgatatcctcggcatccttcttggtagttggaatatcatctgccattatgattgattgattttttaccctggcggaacctctgtctcacgcgggagtatgtatcag

Basic information

species Glycine max
transcript GLYMA13G32670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 4
GCTAGTTGGTGTTGGCGAGGCTTCATTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAGgtttgttcctttcccttggatgatatcctcggcatccttcttggtagttggaatatcatctgccattatgattgattgattttttaccctggcggaacctctgtctcacgcgggagtatgtatcag
| ||||||||||||| || || |||||||||||||||||||| || || |||||||| ||||| ||||   | ||||||   || ||   ||| ||  ||  | |    ||| ||||  | |  ||   |   || |    ||   |   ||    ||||||| |  |       |||||                      
GTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGATAATGCTCCAGCAGCACAGgttctgtcatt---cttaga--atgcctttacaatctttctctgca-ctgagctgatatattatgttcaaacaaatcttatttttacac-agtattgtttctgtgct-------------------

upper sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G164743_T01 (Zea mays), 5'ss of exon 5
GCTAGTTGGTGTTGGCGAGGCTTCATTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAGgtttgttcctttcccttggatgatatcctcggcatccttcttggtagttggaatatcatctgccattatgattgattgattttttaccctggcggaacctctgtctcacgcgggagtatgtatcag
| | || || |||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||  ||||||||      || ||||       |  ||| |  ||   | |        | || | ||||       ||   |  ||||   | ||   | || | || | | | | |    | || ||       
GTTTGTGGGCGTTGGCGAAGCTTCATTTATAAGTCTTGCAGCTCCATTTATTGATGACAATGCACCAGTAGCTCAGgttc---tgttgccct-----attgcccttgagatttcttt-----accgtaaca-catcca-----atttctttttgaacatgtaggatagctggacat-tattttattaagaagaata------

upper sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G062024_T01 (Zea mays), 5'ss of exon 5
GCTAGTTGGTGTTGGCGAGGCTTCATTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAGgtttgttcctttcccttggatgatatcctcggcatccttcttggtagttggaatatcatctgccattatgattgattgattttttaccctggcggaacctctgtctcacgcgggagtatgtatcag
| | ||||| |||||||| ||||||||||||||||| ||||| || || |||||||||||||| || ||  ||||||||   |  || | ||       |   || |  ||   |||       || || | ||| | | |||         |  ||||| |  |   ||  | ||   | |||        |||  || | 
GTTTGTTGGCGTTGGCGAAGCTTCATTTATAAGTCTCGCAGCTCCATTCATTGATGACAATGCACCGGTAGCTCAGgttatgttgttgcact-----attgctcttgtgatttctct-----actgtaaca-catatccaatt---------tattttttaatacgtacgagagctgcatatcatt-----atatcaatga-

upper sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 2
GCTAGTTGGTGTTGGCGAGGCTTCATTTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAGgtttgttcctttcccttggatgatatcctcggcatccttcttggtagttggaatatcatctgccattatgattgattg---attttttaccctggcggaacctctgtctcacgcgggagtatgtatcag
| | ||||||||||| ||||||||||||||||||||||| || || || ||||||||||||||||||||| |||||||||||| ||| |  |||  |  |||  | ||  |   | |  |||  ||   | |  |||     ||| |    |||   | |||||    |   | |                              
GTTTGTTGGTGTTGGTGAGGCTTCATTTATAAGTCTTGCTGCTCCATTCATTGATGACAATGCCCCAGTTGCTCAGgtttgtttcttccttttgttt--tatgttgggactttctttctgtatatgtttttttttctttatatataaactgttggacactttttcttattttgaagag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295219|gb|FG986938.1|FG986938
EST:     TTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAG                         AAAACAGCATGGCTTGCAATATTTTACATGTGCATACCATCGGGCTATGCA
genomic: TTATAAGTCTTGCAGCACCTTTTATTGATGACAATGCCCCAGTTACTCAGgtttgttcct ... tatgtatcagAAAACAGCATGGCTTGCAATATTTTACATGTGCATACCATCGGGCTATGCA