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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGGGATCCTTGTGAAGTAGCTAATGCCGTTCTTGCCATTATACGAGgtttcaatctatttatgtcattcaaacatgtcatgtcccttttttctgtgctgttatatgtttaaactgtttattaaatactgacaggcag

Basic information

species Glycine max
transcript GLYMA13G31980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 5
------GAAATGGCATGGCAAAATCTCTTCTTGATTCAGTTGGGGATCCTTGTGAAGTAGCTAATGCCGTTCTTGCCATTATACGAGgtttca------atctatttatgt-----cattc-aaacatgtcatgtcccttttttctgtgctgttatatgttta------aactgtt-tattaaata-ctgacaggcag----
      ||||||||||||| ||||||||| | ||||||||||| |||||||||  |  |  |||||| |||||||| ||||| ||||||| ||       || ||| |  |     ||||  ||| ||  ||| ||  ||| |    || |    | | ||||      || |||| |  || ||| || ||     |    
GAACAGGAAATGGCATGGCTAAATCTCTTTTGGATTCAGTTGGTGATCCTTGTTCACCAATTAATGCTGTTCTTGCTATTATTCGAGgttacacagagcgtccattaacatttttgcatttgaaatattgcatttctttttatctgttggtaacttgtttttattaaagaattgttctgctacatatctaacccattgacag