1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgcttgctgcagaagtctgtttctacgcatatataacttggggggttttaaatctagtttggcactcaattttcacacgaatgtgttatttttat...
species | Glycine max |
transcript | GLYMA13G31720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|193430435|gb|FK397315.1|FK397315
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|6726324|gb|AW310678.1|AW310678
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|7029731|gb|AW459514.1|AW459514
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|254347708|gb|GR853957.1|GR853957
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|193366545|gb|FK332911.1|FK332911
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|10234310|gb|BE803198.1|BE803198
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCEST: gi|208134200|gb|GD927023.1|GD927023
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
EST: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAG ACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
genomic: AGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgctt ... tttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAACTGTCCTGTTGGAGAGCTGCTTGACATATCACAGCGTTTAAAGACAGCAAGTGAGGTGAATGCAGCCATACTTACTAGCCAGAGCCATGAAAAAGgtttgtgcttgctgcagaagtctgtttctacgcatatataacttggggggttttaaatctagtttggcactcaattttcacacgaatgtgttatttttat
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggt