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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGgttttttgtcctacaatttcatggaccatggtttttggggctttgcttgggaattgggatgtttgtttgaagtttaacagtaaattgatagaaaatgatccgttcttaatcttatccccatgttgtgcag

Basic information

species Glycine max
transcript GLYMA13G29520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g54480.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGgttttttgtcctacaatttcatggaccatggtttttggggctttgcttgggaattgggatgtttgt-ttgaagtttaacagtaaattgatagaaaatgatccgttcttaatcttatccccatgttgtgcag
|| | || | ||   ||| |||||||| |||||||| |||||| | |||||||| || || || || |||||||||||||| | ||||| | | ||||||||||   |||||| |        | |   | |||||     ||   ||    |      || |  | || |  | | | |   | |||||| |     ||  |  ||                        
TGATGTGCTACAACTAATACGGCATCCGAATGTCGTGCAATTTTTAGGTGCTGTAACACAAAGCAGCCCAATGATGATTGTAATGGAATTTATGCCCAAGgttt---gtcctata--------ggcagcgcttttttaaatttgcattattcacatatctgatcatctttagatctgagacctatttgataaactgcaataggagctgctg--------------------

upper sequence: GLYMA13G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 5
TGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGgttttttgtcctacaatttcatggaccatggtttttggggc--tttgcttgggaattgggatgtttgtttgaagtttaacagtaaattg--atagaaaatgatccgttcttaatcttatccccatgttgtgcag
|| | || | ||    || || ||||||||||| || |||||| |||| |||||||| || || | ||||||||||||||| | ||||| | | | ||||||||   ||| || |     ||  | ||  |||||   | |      ||||    | |   ||  ||   ||  |    |  | ||| |  ||  |  |||||  ||                           
TGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATTGTCATGGAATTTATGCGCAAGgttt---gtctta-agggcaat--atcaatgttttcaagtcggacgacttgctggtcgttgtggctgaccgac-tagggcgattaatcgcgattaatcatgattagt---------------------------

upper sequence: GLYMA13G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G18950.1 (Arabidopsis thaliana), 5'ss of exon 5
TGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGgttttttgtcctacaatttcatggaccatggtttttggggctttgcttgggaattgggatgtttgtttgaagtttaacagtaaattgatagaaaatgatccgttcttaatcttatccccatgttgtgcag
|||  || |||| |   |  ||||||||||  | || || ||||| |||||||| ||||| ||||  ||||||||||||||||| |||||| | |||| |||  |   |    |   |  ||     ||  ||||||    |    |   |||         |  |||||  | ||    | |                                               
TGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactttctctgataaatttgaaattatttttgcatttagtttcacgaaaccaagatctcatttga--tatattcttcag----------------------------------------------

upper sequence: GLYMA13G29520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 5'ss of exon 5
TGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGgttttttgtcctacaatttcatggaccatggtttttggggctttgcttgggaattgggatgtttgtttgaagtttaacagtaaattgatagaaaatgatccgttcttaatcttatccccatgttgtgcag
|||  || | ||||| || || ||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||||||| |||||| | |||||||||||||           ||||    || | ||  | |              | ||  ||| |  || ||| | | ||  | | | | |      ||   | ||  |  || ||                
TGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGgtttttt-----------tcatcattca-gattactagaatgaaataaaattaatgtaatgatccttggaactgttac--tgattagctgtttcttggatctttgattttccta----------------