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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATgtaagggttcaagttgatgttctttacattatgtgttcttgtgtcatgtttaagtggtcttattaccagttaacttccacaatatttgactaatgaactg...

Basic information

species Glycine max
transcript GLYMA13G28460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
ATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATgtaagggttcaagttgatgttctttacattatgtgttcttgtgtcatgtttaagtggtcttattaccagttaacttccacaatatttgactaatgaactg---------
 |||||||| || |||||| | ||||||||||| |||||||| ||||||||||  ||| | |||||||||||||||||||| ||  | ||||||   || ||| |  || |    ||  | ||||| ||      || | | || |   | | ||  |  | ||      || | |    |||   |||  | ||   |          
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatg--ttta----gagatgctttatatagcactttttggggttacagtgaggt--taatgttgttgacta-cattgttaatgggtgatgattggtatttgcatacaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348335|gb|BM892867.1|BM892867
EST:     GTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAAT                         TTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAG
genomic: GTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATgtaagggttc ... gatcaaccagTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAG
EST: gi|208174568|gb|GD968193.1|GD968193
EST:     GTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAAT                         TTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAG
genomic: GTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATgtaagggttc ... gatcaaccagTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAG