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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTGCTCATTCCGGTGGCTGTGTGCCATGCATTAGGCCACGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaagtttatgagatatatacgtgaaactatatatatatatatatatatatatatatatatatatatatatatacacgtatctactttctaacattaataaacttgtgtttcag

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 5
AAGTTGCTCATTCCGGTGGCTGTGTGCCATGCATTAGGCCACGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaagtttatgagat-atatac-------gtgaaactatatatatatatatatatatatatatatatatatatatatata---tacacgtatctactttctaacattaataa-acttgtgtttcag-----
||  ||||||| || || ||||| || |||||  ||||||| ||||| ||||||||||| ||||| |||||||| || |||||||| || || || |||||| | | || | |||  ||| ||| |        |  || |  ||  |  |    | |  |   || |   | | |   |||| |   |||||   |  | | |||  |||  ||||  ||| | |||        
AAACTGCTCATCCCCGTTGCTGTATGTCATGCTCTAGGCCATGTGACTAGCAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgttatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588731|gb|AW704520.1|AW704520
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|15287940|gb|BI471831.1|BI471831
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|26269191|gb|CA820254.1|CA820254
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|26056377|gb|CA799291.1|CA799291
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20498046|gb|BQ272976.1|BQ272976
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|22524479|gb|BU083290.1|BU083290
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20076102|gb|BQ094885.1|BQ094885
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTTCA-TGCTGCTGCT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTT-CAATGCTGCTGCT
EST: gi|16995981|gb|BM085353.1|BM085353
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|31561929|gb|CD487767.1|CD487767
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAAATGCTGCTGCTTCACAGTTCATACTTGGCCAA
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAA-TGCTGCTGCTTCACAGTTCATACTTGGCCAA
EST: gi|10845918|gb|BF068938.1|BF068938
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|120530166|gb|EH258300.1|EH258300
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|22524883|gb|BU083694.1|BU083694
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|9564410|gb|BE473919.1|BE473919
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|22540054|gb|BU089897.1|BU089897
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|8404364|gb|BE059998.1|BE059998
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|17964192|gb|BM270931.1|BM270931
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|13481992|gb|BG511335.1|BG511335
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|23057815|gb|BU578270.1|BU578270
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGACAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|209721962|gb|BW669348.1|BW669348
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTC
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTC
EST: gi|7690833|gb|AW758970.1|AW758970
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|9819687|gb|BE555200.1|BE555200
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|7926336|gb|AW832362.1|AW832362
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20448949|gb|BQ253073.1|BQ253073
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|9900710|gb|BE609678.1|BE609678
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|23053059|gb|BU577550.1|BU577550
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|208277399|gb|GE081210.1|GE081210
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|20449432|gb|BQ253556.1|BQ253556
EST:     CAATGTCTCATTTGCTGCAGATGGTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGGCATTCTTCAATGCTGCTGCTTCCCAGGTCATACTTGGGCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|26048112|gb|CA784701.1|CA784701
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|151395328|gb|EV265199.1|EV265199
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
EST: gi|7285024|gb|AW597511.1|AW597511
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaag ... tgtgtttcagCTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTTGCTCATTCCGGTGGCTGTGTGCCATGCATTAGGCCACGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtaataaaagtttatgagatatatacgtgaaactatatatatatatatatatatatatatatatatatatatatatatacacgtatctactttctaacattaataaacttgtgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT