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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTGTTGATCGACATCTGGTTCAGACAGTGGTACCTGGCTCAAGATTGACAATCATGGGAATTTTCAGTATCTACCAGGCTTCTAACTCTAATACATCgtgagattcatcaccaatttaatttttgtatatttaatttttttttcattctcccatctgtaattgatgtctggcttcaaatatattgtgttatatgcag

Basic information

species Glycine max
transcript GLYMA13G22420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 5
TCTCTGTTGATCGACATCTGGTTCAGACAGTGGTACCTGGCTCAAGATTGACAATCATGGGAATTTTCAGTATCTACCAGGCTTCTAACTCTAATACATCgtgagattcat----caccaatttaatttttgtatattt---aatttttttttcatt--ctcccatc--tgtaattg-atgtctggcttcaaatatattgtgttatatgcag----------------
| || || ||||| ||||| || || ||  | ||||| ||| |||||||||| ||||||||||||| |||||| || |||||  | || |||   || |||| ||  ||||    |||  |  |||   |   | | ||    ||||  | |||| |   |   ||   || ||||  |||| |   |     |   |||  || |     |                
TATCAGTGGATCGCCATCTTGTCCAAACCATTGTACCAGGCACAAGATTGACTATCATGGGAATTTACAGTATTTATCAGGCAGCCAATTCTTCCACCTCgtaaggatcatttgacactgagataagcataacacaatttgtgatttaatcttcactaattttgattgttggaattacatgtttatttatgggtcagttggtttgttgattgattggttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193416118|gb|FK376696.1|FK376696
EST:     CAATCATGGGAATTTTTCAGTATCTACCAGGCTTCTAACTCTAATACATC                         CCACAAAGGAGCAGTTGCAATTAGACAGCCTTATATTAGGGTTGTAGGAAT
genomic: CAATCATGGGAA-TTTTCAGTATCTACCAGGCTTCTAACTCTAATACATCgtgagattca ... ttatatgcagCCACAAAGGAGCAGTTGCAATTAGACAGCCTTATATTAGGGTTGTAGGAAT