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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAGAAAGGAAGGGTAGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgctgtcctatttttttttaaaacaattttttaattaccttttttccccacattatctttagtttatgcgaaggggcaacagatgtatctctgttttgggtttttgtttttgcaagcatcagcatatatccccttgtatcttgcag

Basic information

species Glycine max
transcript GLYMA13G21370.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789881|gb|BG652472.1|BG652472
EST:     CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGC                         TTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
genomic: CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgct ... tatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
EST: gi|192316194|gb|FK011609.1|FK011609
EST:     CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGC                         TTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
genomic: CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgct ... tatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
EST: gi|51337898|gb|CO981764.1|CO981764
EST:     CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGC                         TTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT
genomic: CACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgct ... tatcttgcagTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGAGAAAGGAAGGGTAGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCgtatgctgctgtcctatttttttttaaaacaattttttaattaccttttttccccacattatctttagtttatgcgaaggggcaacagatgtatctctgttttgggtttttgtttttgcaagcatcagcatatatccccttgtatcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC