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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttgtattttatccatagaaatgtaaaactctcaattatatcgtctgacaatattttatgtcttttgcag

Basic information

species Glycine max
transcript GLYMA13G20790.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20790.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g16900.3 (Oryza sativa), 5'ss of exon 7
ATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttgtatt-ttatccatagaaatgtaaaactctca-attatatcgtctgacaa-tattttatgtcttttgcag
||||||  ||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||||||  || |||| || ||||| || ||||| |||||  |||  |||| ||     ||  ||| | | |  |    | || | || |    || ||||||    || |  |||
ATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATGGTGATATTATTAGTGATCTTTGTGCTGGTCTGATTGGAGGCTTGGGCTTGACACCCAGgtaaatttgttattgtttgttctatcaatttgacatccaggtaatacaacgccaactaactattttgca-ctctcccag

upper sequence: GLYMA13G20790.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 6
ATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgta--ctttttgtattttatccatagaaatgtaaaactctcaattatatcgtctgacaatattttatgtcttttgcag-
||||||  ||||| || ||| |||||||||| || || |||||||| ||||||||||| || |||||||| ||| | ||||| |||||  ||||||| |||||  |||  | | ||| ||| | |      |     |    |    |    || ||| |  ||| | | |||| |   
ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgctttgtttaatcta-atttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccag

upper sequence: GLYMA13G20790.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 5'ss of exon 5
ATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttt-tgtattttatccatagaaatgtaaaactctcaattatatcgtctgacaatattttatgtcttttgcag
||||||| ||||| |||||  | |||||||||||||| |||||||| ||||||||||| || |||||||||||| |||||||| | || ||||||||||||||  ||  | |||| ||||      ||| || |    |||  || ||| ||  |||   ||     || |   |||
ATCCTGCGCTTTTTGATGTGTTGGTGATGCCTAACCTCTATGGTGACATTATTAGTGATCTCTGTGCTGGCTTGATTGGGGGACTAGGCTTAACACCAAGgtatcttcatttattctatcatctttaatttatatgattcatatagatcctc--acatctttcggcttcctacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702313|gb|BW667501.1|BW667501
EST:     ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
genomic: ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
EST: gi|151406995|gb|EV276810.1|EV276810
EST:     ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCGAGGGAGGTACTGCACTTGCTGAGGCTGTACATGGTTC
genomic: ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
EST: gi|21677612|gb|BQ629963.1|BQ629963
EST:     ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
genomic: ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
EST: gi|254321137|gb|GR827586.1|GR827586
EST:     ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
genomic: ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
EST: gi|22930892|gb|BU548031.1|BU548031
EST:     ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
genomic: ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
EST: gi|213612273|gb|DB976850.1|DB976850
EST:     CTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCCAGGGAGGTATTGCACTTG-TGAAGGCTGTACATGTTT
genomic: CTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTG-AGGCTGTACATGGTT
EST: gi|7924579|gb|AW830605.1|AW830605
EST:     ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAG                         CTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC
genomic: ATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgtactttttg ... tcttttgcagCTGCAACATTGGCGAGGGAGGTATTGCACTTGCTGAGGCTGTACATGGTTC