1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAGgtatgtatattttttaaaatttgtacagatatagcatatgttcatttcaattggaatgggattgtgatggcaaaaatttagtgaggtttgtttgatagat...
species | Glycine max |
transcript | GLYMA13G19730.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAG GAAAATGGATACCAACTACTTTTTCTGAGTGCCCGTGCAATTGTCCAGGCAEST: gi|13479791|gb|BG509134.1|BG509134
genomic: GCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAGgtatgtatat ... tttatgtcagGAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCA
EST: GCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAG GAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCAEST: gi|21994257|gb|BQ785785.1|BQ785785
genomic: GCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAGgtatgtatat ... tttatgtcagGAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCA
EST: GCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAG GAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCA
genomic: GCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAGgtatgtatat ... tttatgtcagGAAAATGGATACCAACTACTTTTTCTGAGTGCGCGTGCAATTGTCCAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAGgtatgtatattttttaaaatttgtacagatatagcatatgttcatttcaattggaatgggattgtgatggcaaaaatttagtgaggtttgtttgatagat
- - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaaaa