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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggactttaaatcctgaatgcactaatatatacatttgttgtcttctcctttcctttttgctccgggagaatgtcaatagatgtggcaggagtagtgttgtcttccctctcacgatcaagtttttatttttccatgtctttctttaatgatcttgtgtcatttttcag

Basic information

species Glycine max
transcript GLYMA13G18170.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320597|gb|GR827046.1|GR827046
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|214004977|gb|DB989110.1|DB989110
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|9564054|gb|BE473563.1|BE473563
EST:     TGGATTCTTCGAGAGGAGTCCTCTCANGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|151406209|gb|EV276024.1|EV276024
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|151404411|gb|EV274221.1|EV274221
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|6951826|gb|AW423894.1|AW423894
EST:     TCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|7285126|gb|AW597613.1|AW597613
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|12497074|gb|BG047384.1|BG047384
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|213598058|gb|DB972246.1|DB972246
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|254320598|gb|GR827047.1|GR827047
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|192326348|gb|FK017665.1|FK017665
EST:     TGGATTTTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
EST: gi|151398913|gb|EV268784.1|EV268784
EST:     TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATG                         GTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT
genomic: TGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggac ... catttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAACGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGgtatgtggactttaaatcctgaatgcactaatatatacatttgttgtcttctcctttcctttttgctccgggagaatgtcaatagatgtggcaggagtagtgttgtcttccctctcacgatcaagtttttatttttccatgtctttctttaatgatcttgtgtcatttttcag

- - - - - - - - - - GAGAGG
- - - - - - - - - -  AGAGGA
- - - - - - - - - - - GAGGAG