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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacgagtgatctgatctatgtagtgaaatgttgcttgaaattaattttatgttttttgaaataccgttttccacttacaagagggtcgaatcatttgtgcag

Basic information

species Glycine max
transcript GLYMA13G17370.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17370.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g01930.1 (Oryza sativa), 5'ss of exon 6
GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacgagtgatctgatctatgtagtgaaatgttgcttgaaattaatttt-atgttttttgaaataccgtt-ttccacttacaagagggtcgaatcatttgtgcag
||||||||||||| || |||||||||||||| || ||||| ||||| ||||||              || ||||| ||   |    ||  || |  ||| |||| ||| | ||  | | |  |   | ||||| || ||    |  |||  ||||| |||
GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgta--------------tgctctatataaccattccttttttta--ttatttttcatgctattgtagagattgaagtgccactaactagccatttcaat--tttgtccag

upper sequence: GLYMA13G17370.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G013607_T02 (Zea mays), 5'ss of exon 6
GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtac-atcacga-gtgatctgatctatgtagtgaaatg-----ttgcttgaaattaattttatgttttttgaaataccgttttccacttacaagagggtcgaatcatttgtgcag
|||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||  |||   | ||  ||| |  | | || | | ||      ||  | | ||| |||||| | | ||||  |  |  |||||   |||    |  ||| |              
GAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgtaatgtactctcaaatttatattaatatatactattattagtaatgaattttttttatttt--atcaatgtttttt-cttttgggctggtggct------------

upper sequence: GLYMA13G17370.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G013607_T06 (Zea mays), 5'ss of exon 1
--------------------------------------------------GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtac-atcacga-gtgatctgatctatgtagtgaaatg-----ttgcttgaaattaattttatgttttttgaaataccgttttccacttacaagagggtcgaatcatttgtgcag
                                                  |||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||  |||   | ||  ||| |  | | || | | ||      ||  | | ||| |||||| | | ||||  |  |  |||||   |||    |  ||| |              
TTTTCAGCTGTAGTTCATGATAACCTTCCCTGCTATTGTGGCTACTGCAGGAGCATGTGAGGGCTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgatcgtaatgtactctcaaatttatattaatatatactattattagtaatgaattttttttatttt--atcaatgtttttt-cttttgggctggtggct------------

upper sequence: GLYMA13G17370.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G856338_T01 (Zea mays), 5'ss of exon 2
GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgta----catcacgagtgatctgatctatgtagtgaaatgttgcttgaaat-taattttatgttttttgaaataccgttttccacttacaagagggtcgaatcatttgtgcag
|||||||||| || || ||||||||||| ||||| ||||| ||||| ||||||    ||  |       | | |  | | || | | ||  |  | | |||   ||||||| ||||     | |  |||||   |||    | || ||   |           
GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgctcactatatactttttcaaatttatattaatatactattagtaatgccattttatttttt-----acagtgttttttcctt-tgtgtggctcatgttggg-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284255|gb|AW596850.1|AW596850
EST:     GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacg ... atttgtgcagGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|254329164|gb|GR833536.1|GR833536
EST:     GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacg ... atttgtgcagGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|22931821|gb|BU548960.1|BU548960
EST:     GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGNNNTAGTCATG                         GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacg ... atttgtgcagGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|14125826|gb|BG790264.1|BG790264
EST:     GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacg ... atttgtgcagGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|254329165|gb|GR833537.1|GR833537
EST:     GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGCTCGCTTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcacg ... atttgtgcagGACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGAC