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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctccttgccatattcatataagtttttattccaatgtttacacagaccctagtcctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcag

Basic information

species Glycine max
transcript GLYMA13G11710.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11710.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G04360.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctccttgccatattcatataagtttttattccaatgtttacacagaccctagtcctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcag
|| ||| ||||     |||||||   | |||| ||  ||||||| |||||||||||||||||||| |||||  | |||||| |||  | ||  ||    | |  | |  | | ||       |  | || || ||| |  | ||  || | |||| | || |   || | | | | |                   
ATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACCACCCGAAAATGgtgagttctatgtacaactagtttgcggtgtt-------tactcactcaaaccttt-ttctgtttctctaaacg-cact---gcttctttatcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269969|gb|BM886225.1|BM886225
EST:     TCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG                         GTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
genomic: TCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctcct ... caatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
EST: gi|7795557|gb|AW780954.1|AW780954
EST:     TTTACAACGATATGACTGCTCGAAAACG                         GTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
genomic: TTTACAACGATATGACTGCTCGAAAACGgtatgctcct ... caatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
EST: gi|213612264|gb|DB974600.1|DB974600
EST:     GCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG                         GTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG
genomic: -CCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctcct ... caatatgcagGTTTGACAAAGGTTCTTGGCTCCTTCCCATATCATTGATACCATTTTTAGG