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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctttatatgtgtgtgtgtctatttgtaaattattaaacaaattgatttattttataggcaatgaaaactgtagatataagaaaatgcagtttc...

Basic information

species Glycine max
transcript GLYMA13G07780.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 4
GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctttatatgtgtg-tgtgtctatttgtaaattattaaacaaattgatttattttataggcaatgaaaactgtagatataagaaaatgcagtttc
 ||||| |||||||| |||||||| ||||| ||||||||||||||  |||||||| | ||  |||| ||||     | | | |   || |     || |  ||  || |        |||         ||     |     | ||    |  |    |||||  ||||
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgc--tttc

upper sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 4
GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctttatatgtgtgtgtgtct-atttgtaaattattaaacaaattgatttattttataggcaatgaaaactgtagatataagaaaatgcagtttc
 ||||| |||||||| |||||||| ||||| ||||||||||||||  |||||||| | ||  |||| ||||     | | | |   ||     || | |  ||  || |        |||         ||     |     | ||    |  |    |||||  | | 
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGGgtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttct-

upper sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctttat-atgtgtgtgtgt---ctatttgtaaattattaaacaaat--tgatttattttataggcaa--tgaaaactgtagatataagaaaatgcagtttc----
|||||| |||||||| |||||||| ||||||||||||||||| ||| | |||||||||||| | ||||| |  |   | || ||     | | |   |    ||| ||   | |||  | |  || |||  ||  ||| |||  | | || ||    | |     | ||  |||      
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaagtatatgatgatccacttctttactcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag

upper sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgcttta-tatgtgtgtgtgtctatttgtaaattattaaacaaattgatt-tattttataggcaatgaaaactgtagatataagaaaatgcagtttc
|||||| |||||||| |||||||||||| | ||||||||||||||  |||||||| ||||| ||||||| |  ||   || | |   ||  || ||||    | |  ||     |  || ||  | |||| |      |      |||   | |    |     |||   
GGTGGTGAATGGTGCTCTTGAATACCTTTCCAAGGATCTTGGAATTGCTGAAAATGCTGTTTTACAAGgcaagtgaagtaatcttcttgattgactatgcaaagagaatcttggacctttatccttttttttttttttttttttttgtgtgttttgacatgacaagta--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605474|gb|DB964613.1|DB964613
EST:     TGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAG                         GCTGGATTGTCAGCACACTACTTGCTG
genomic: TGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctt ... ctgtgaacagGCTGGATTGTCAGCACACTACTTGCTG
EST: gi|209725014|gb|BW663004.1|BW663004
EST:     TGAATACCTTGCTAAGAATCTTGGAATCACTGAAAATACTGTTATACAAG                         GCTGGATTGTCAGCACACTACTTGCTGGTGCCACTGTTGGTTCATTTACTG
genomic: TGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctt ... ctgtgaacagGCTGGATTGTCAGCACACTACTTGCTGGTGCCACTGTTGGTTCATTTACTG