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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgttagctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgatgactttcttatccttccag

Basic information

species Glycine max
transcript GLYMA13G07090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g31840.1 (Oryza sativa), 5'ss of exon 6
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgttag--ctatgctttccatttgaagaacc-----atttattggttagaaatatggacctataatga-tgactttctta-------tccttccag-----
|||||| ||||||||||| || || ||||| || |||||||| ||||| ||||| || |||||| |  ||||| || ||||||||||||| || |||||||| ||     |||   |||| | |     |     | || ||   |     ||||  |  | | ||| ||| ||||          |  ||| |      
AAATCCAAGCATGTATGCAAGTCAATGGTTTATCACTGTTTTCTCGTATTCCTTCCCTTTTCATCTAACTCTTAGAGTTTGGGATGTCTTCCTGTATGAGgtcagaatcttgcccgccatataattgttctgtttactttttatctgaggttatgagctaagattgactgattttcaaggcacaatttattctaatacat

upper sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g31840.4 (Oryza sativa), 5'ss of exon 6
----------------------------------------------------------------------------------------AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgttagctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgatgactttcttatccttccag
                                                                                        |||||| ||||||||||| || || ||||| || |||||||| ||||| ||||| || |||||| |  ||||| || ||||||||||||| || |||||||| ||  |  |||                                                                   
CGCTTGTGCAGCAATATCTGTATCAGTTTGAGAAATTAGTTCTGGAGCAAATGCCACAGTTGGGACAGCATTTTATTGAAGAAATGATAAATCCAAGCATgtatgcaagtcaatggtttatcactgttttctcgtattccttcccttttcatctaactcttagagtttgggatgtcttcctgtatgaggtcag--aatcttg------------------------------------------------------------------

upper sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G047223_T02 (Zea mays), 5'ss of exon 6
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgttagctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgat--gactttcttatccttccag----------------------
||| || ||||||||||| || || ||||| || || ||||| || || ||||| ||||||||| |  ||||| || |||||||||| ||||| |||||||||||  ||  | |||      |    |||||  || |||||    || ||||    | ||  ||||||  | |     |                        
AAACCCAAGCATGTATGCAAGTCAATGGTTTATCACAGTTTTCTCATATTCCTTCCCATTTCATCTAACTCTTAGAGTTTGGGATGTGTTTCTTTATGAGgttaga-atcttatcctgccatatgtgcattttgtgtttagat---tgcaccttgggttatttgacttttctttatgcactattgcttcataaatggtatagtc

upper sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0083g00540.t01 (Vitis vinifera), 5'ss of exon 6
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgttagctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgatgactttcttatccttccag---
||  |||||||||||||| || |||||||||||||||||||| || ||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||   | ||      |     ||   |  | | |  |  | |||     | |  |    || || |||| | |   |   
AAGCCCTAGCATGTATGCAAGTCAGTGGTTCATAACTGTTTTCTCATACTCTTTCCCATTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTTTATGAGgttagtggt-ctaaaagctcattaaattctccaataggcaccattat---tttgttttaggaacatttttattccttgggcag

upper sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S15_13V6.1 (Physcomitrella patens), 5'ss of exon 5
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgtt----agctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgatgactttcttat-ccttccag----------------
|||||| |||||||||||||| || |||||||| || || ||||| |||||||| || ||    || ||||| || ||||||||||| ||  |  | ||||||       ||  ||| |  |       | ||  | ||     |   |||| | || |    ||| |    | ||  |||  ||                
AAATCCAAGCATGTATGCTAGTCAATGGTTCATCACCGTCTTTTCATACTCCTTCCCTTTCTCCTTAGCTCTGCGGATTTGGGATGTGTTCTTACACGAGgtttcttgcttactcttcctctccctttcagcagctctttacacgtgttatgcatct-ttgcaatgtccagttcatgtcttgtagagaagtctggataatc

upper sequence: GLYMA13G07090.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ27331 (Selaginella moellendorffii), 5'ss of exon 5
AAATCCTAGCATGTATGCTAGCCAGTGGTTCATAACTGTTTTTTCGTACTCCTTTCCATTTCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGgttagctatgctttccatttgaagaaccatttattggttagaaatatggacctataatgatgactttcttatccttccag
||| || |||||||| || ||||||||||| || ||||||||||| || |||||||| || |   | |||||||| || ||||| || ||||| || |||||| |     |||||    | |   |   |||  ||   |||  |  |   ||   || |||                  
AAACCCAAGCATGTACGCCAGCCAGTGGTTTATCACTGTTTTTTCTTATTCCTTTCCGTTCCCGCTAGCTCTTCGGATATGGGACGTTTTTCTGTACGAGgtttgtatctctttcttgcttatctatttttttctga--agagttgcgaggctgctattatgttgcag------------