1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagcataattatagagtatagagtaaatcaactttgtgtgtgtctaacactttcaagctattgtttgatacag
species | Glycine max |
transcript | GLYMA13G06730.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCACGAAGEST: gi|298176561|gb|HO023148.1|HO023148
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGEST: gi|193697032|gb|FK638874.1|FK638874
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|193609438|gb|FK564344.1|FK564344
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: TTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|193510569|gb|FK468075.1|FK468075
genomic: TTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|193609973|gb|FK563535.1|FK563535
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|17020647|gb|BM091681.1|BM091681
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|207683310|gb|GD665975.1|GD665975
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|11117964|gb|BF219557.1|BF219557
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGEST: gi|193307217|gb|FK272989.1|FK272989
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAATCAGATCTTTGACCATGAAGEST: gi|8284985|gb|BE022544.1|BE022544
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
EST: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
genomic: ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagca ... tttgatacagGAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGgtagttagcataattatagagtatagagtaaatcaactttgtgtgtgtctaacactttcaagctattgtttgatacag
- - - - ATGCTG
- - - - - GCTGGA
- - - - - - - - - - - AGCTGA
- - - - - - - - - - - - GCTGAT