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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattattattatatttcctttttctttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt...

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g45420.3 (Oryza sativa), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgt-----actatttttcttaatttaattattattatatttcctt-tttctttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt
||| ||||| ||||| |||||||| ||| | ||||||||||| ||||| || ||||| |||||||| || || |||||||| || || || |||||||||||     |  || |    ||   || | || |   |  | |||  | || ||||||  |||  ||||          ||||  ||   ||  | |  |||   |  
AGTTGATGTGTGGAGTTGTGGTGTTATTCTTTATGCTCTTCTTTGTGGTACCCTTCCATTTGATGACGAGAATATTCCCAACCTTTTTAAGAAAATAAAGgttagcaaagatgtgatatatcctactgataaaggtgctgcctcatctccttttatatgtt--aaag----------taaaactctgtccgttttgatgttctag-

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g17980.2 (Oryza sativa), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactat---ttttcttaatttaatta---ttattatatttcctttttctttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt------------------------
 || ||||| ||||||||||| || ||  | |||||||| || ||||| |||||||| ||||||||||| || || ||||| || |||||||| ||||||||   ||   |||   ||   ||   |    |  || | |    | ||   |  ||||   | |||  |   |   ||  |||      |  | |  |     |||                        
GGTTGATGTATGGAGCTGTGGAGTGATCCTTTATGCTCTCCTTTGTGGTACTCTTCCATTTGATGATGAGAATATCCCCAACCTATTCAAAAAGATAAAGgtgagatagatttatgtaggctagccagaccttgtaaactcttatgttgactagatggtccttaaaatatctaagtttttattattattctgtatatttgagtatttgacctgtttgtttggtgttccag

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G107867_T02 (Zea mays), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattatta---ttatatttcctttttctttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt
 || ||||| ||||| ||||| || ||| | ||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| ||||||||||| |||||   |     ||||  |  | ||  |   ||  |     |   |  | || |||  ||   |  |||     |    |||  |||   | | |         
GGTCGATGTATGGAGTTGTGGGGTGATTCTTTATGCTCTTCTTTGTGGAACTCTTCCATTTGATGATGAGAATATTCCCAATCTGTTCAAAAAAATTAAGgtgagaaagcacttatgtggaatacaaaccttgcaacaattagattctgttctggagttatgaccactctctatctggttt--tacggttttag---------

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G077278_T01 (Zea mays), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattattattatatttcctttttctttttatgggtttcaaaggactgatagttaaatttcctacc--actgtcgtgtcaaatt
||| || |||||||||||||| || ||| | ||||||||||| ||||||||||| || ||||| ||||| || ||||| || || ||||| |||||||||||    | |    | | | | ||    | | |     |  ||  | || |   ||| | | |    |||  |   |||  || |  | ||| |         
AGTTGACGTCTGGAGCTGTGGAGTTATTCTTTATGCTCTTCTTTGTGGCACTCTCCCATTTGACGATGAGAATATTCCAAACCTTTTCAAGAAAATAAAGgtgagctataatctcagtgattttacctgaaaaagattcctttatattttatttttaatatgctcaataaattctttttatatctaattgtag---------

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G29160.3 (Arabidopsis thaliana), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattattattatatttcctttttc------tttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt
||||||||| ||||| || || || || || || |||||  | || || |||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |   |  || ||| |||    | | |    ||| ||       ||  ||||  | | ||   ||| ||       |||  |  | || | |         
AGTAGATGTATGGAGTTGCGGAGTTATATTGTACGCTCTATTATGCGGTACTCTTCCTTTTGATGATGAAAACATTCCCAACCTTTTCAAGAAAATTAAGgtactgtacgttatactttgattcagctaaaagactcttcttaaatggattcatatgtatgtgaagtaacttatcaaggtgttttttttctctttag---------

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G01090.2 (Arabidopsis thaliana), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtac-------tatttttcttaatttaattattattatatttcctt---tttctttttatgggtttcaaaggactgatag--ttaaatttcctaccactgtcgtgtcaaatt----
|||||||||||||||||||||||| ||  | || |||||||||||||| || ||||| ||||||||||||||||||||||| || || || || ||||||||||       || |  || |  ||    ||||   |    | |||   ||| || || |   ||||  |  ||   | |  |  ||  |  |     | || | ||    |    
AGTAGATGTCTGGAGCTGTGGTGTGATACTCTACGCTCTTCTCTGTGGGACGCTTCCATTTGATGATGAAAACATTCCCAACCTTTTTAAGAAGATAAAGgtacattctattactcctcctctttcgtctatttgaactaatgcttgaattttttattttatttttcgtatcacccttcgactgtaaccttttttttttctcttttcgtcctatag

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 5
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattattattatatttcctttttctttttatgggtttcaaaggactgata-gttaaatttcctaccactgtcgtgtcaaatt
 || ||||| |||||||| ||||| ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| |||||||||||| |  |    ||| || | | | | |||    |       |||     |   | ||  |  ||  |  ||    || | |   | | |  |||  |   
GGTGGATGTATGGAGCTGCGGTGTTATTTTGTACGCTCTTCTTTGTGGTACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTCAAGAAAATAAAGgtatttctaaatttacttcactaactttta-gcatgtgccagcttagctggatctgcattgctcttttttgtccttttactttttatttttttgtttagaa

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ16445 (Selaginella moellendorffii), 5'ss of exon 4
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattattattatatttcctttttctttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt
|||||| || ||||||||||| || ||  |||| || |||||||||||||  ||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||   ||   ||  |    ||  | | ||| || |  ||| | || || |   || | |                                         
AGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACGAAAACATTCCAAATCTATTCAAGAAAATCAAGgtga-atcagtcagacaacaagaagtcttaaatgttttttcttttcttgtttattcccag----------------------------------------

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ17922 (Selaginella moellendorffii), 5'ss of exon 4
AGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGgtactatttttcttaatttaattattattatatttcctttttctttttatgggtttcaaaggactgatagttaaatttcctaccactgtcgtgtcaaatt
|||||| || ||||||||||| || ||  |||| || |||||||||||||  ||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||   ||   ||  |    ||  | | ||| || |  ||||| | ||  |   |  ||                                          
AGTAGACGTATGGAGCTGTGGGGTGATACTATACGCACTTCTCTGTGGCAGCCTTCCCTTTGACGACGAAAACATTCCAAATCTATTCAAGAAAATCAAGgtga-atcagtcagacaacaagaagtcttaaatgttttttttttcttgtttattcccag-----------------------------------------