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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag

Basic information

species Glycine max
transcript GLYMA13G03430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag
|||||||  ||||||||||| |||||||| ||||| || |||||||||||||| || ||||| ||||| | ||||||| | |||||||| || | ||||||| ||         ||| ||   | | ||| | |    | | ||        ||  || || |  |  |     | ||||| |   ||  | |||    | |   || | |||                                       
GATGGGAGACCTGGATGTGTTCAGAACACATGTGCTCACAGAGCCTGCCCTCTTCATCTTGGCTCAGTTAGTGAGGGTAGAATCCAATGCCCTTTCCATGgtaag---------aaaaaagaaactttatatgaaatttcattttggcacgctt-ctgctgtttttacaatctgattttcaaa--gcatcagctagcactatggctata-tga---------------------------------------

upper sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatga--ttatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagat-ttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag
|||||||  |||||||||||   |||||| ||||| || ||||| |||||||| || ||||| ||||| ||||||||  | |||||||| || ||||||||| ||     ||      | ||||  ||  || |  ||| ||  |      | |||  ||| |    |  || || || ||  |      ||||  | |||  ||  | |    | | || |  |  | |    ||||| |   ||         
GATGGGAGACCTGGATGTGTTATGAACACATGTGCTCACAGAGCTTGCCCTCTTCATCTTGGCTCAGTTAATGAGGGCAGAATCCAATGCCCTTACCATGgtaagaaaagacagctttacatgaactttcatttctgca-tgcttccgcatttatttctgaagtc--ttcagatgaaaatttgc------caacagagagaagttgcgaaagtagtatttcagtttttttttgttttcataaccttcag------

upper sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G038487_T01 (Zea mays), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag
|| || | |||||| ||||| |||||||| ||||| || || || ||||| ||||| ||||||||||| || |||||| | ||||| || || ||||||||| |||   |  |              | ||| |    |  || | |    ||| | |  | || ||||  | |  ||||| |     |  |     | ||| | ||| |||    |||  ||                             
GACGGAAGGCCTGGGTGTGTTCAGAACACATGTGCTCACAGGGCTTGCCCGCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcctac--------------tgtctgaat--taggtcaga---gattctcggggttactgtatct-tgttttcagaa-gtgcgcctacttgttttgtttaccctgt--ctgaatta-----------------------------

upper sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag
|| ||||| || |||||||| | ||| || ||||| |||||||| || |||||  | |||||  |||| || ||||| ||||| |||||||| |||||||||||||            |    |  ||   ||   ||  ||| | |    ||   | ||       ||  ||| ||||   |                                                                     
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatg--ttgataacaagtgagaaaccatatcttat-------taaatgtgattttgtag--------------------------------------------------------------------

upper sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactcta-aaatttcaaatggttggatatcag
|||||||| ||||||||||| |  |||||||| || |||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||       |||  |||| |  | |  ||  |  ||  ||     |||     ||||  ||   |  |   | | || |    | ||  ||    |||    |    ||||||    |  |  |  || ||||                
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacc-tgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524453|gb|BU083264.1|BU083264
EST:     TCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGAC
genomic: TCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtc ... tggatatcagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGAC
EST: gi|17153877|gb|BM143810.1|BM143810
EST:     TCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGAC
genomic: TCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtc ... tggatatcagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGAC
EST: gi|193495601|gb|FK459399.1|FK459399
EST:     TCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATG                         GCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGAC
genomic: TCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtc ... tggatatcagGCTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGAC