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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaaccaaattatgcaagtgttaatcagactcatgcagttatgcattgaattcaagacttaaacatgagtgttcctaatgttgttgcag

Basic information

species Glycine max
transcript GLYMA12G36950.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g31900.1 (Oryza sativa), 5'ss of exon 5
GCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaacca-aattatgcaagtgttaatcagactcatgcagttatgcattgaattcaagacttaaacatgagtgttcctaatgttgttgcag
|| || ||||| || |||||||| ||||| || ||||||||||| ||||||||||| ||||| ||||  |       |   ||   | || ||||| ||| |      ||||   || |    | || |    |  ||||||    |   |      
GCTTCACAAGACAAGAAGAGCCTTGATGTAGGGGCAAATCTTTTTATTGGCAATCTCGATCCGgtaaaaacttgtggtctagcttttctttatcag-ctcgtttg--catgcgaagagt----ggctaatggctttgtgttctgtgttcag------

upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G102639_T02 (Zea mays), 5'ss of exon 3
GCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaaccaaattatgcaagtgttaatcagactcatgcagttatgcattgaattcaagacttaa-acatgagtgttcctaatgttgttgcag
|| ||||| ||||| |||||| |||| ||||| |||||||| || ||||||||||||||||| || |    | ||||  |  |  | || || |     ||||  |  |  ||| |  | || ||| |  | ||   | | | |  | |  |  |||
GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGCAATCTTGATCCGgtgaaggcctaaatccta-atttcttcatta----tatgc--tcttcaattcatctgaatactgagtatatttttatgcttgctttgttaacag

upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G170699_T01 (Zea mays), 5'ss of exon 5
GCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaaccaaattatgcaagtgttaatcagactcatgcagttatgcattgaattcaag-acttaaaca-tgagtgt-tcctaatgttgttgcag-------
|| || || ||||| |||||| |||| ||||| |||||||| || ||||||||||||||||| || |    | ||||  | |   |  | ||||| ||| |  | | ||   ||||||  |   |  | || | ||||| | |  | |||||      |       
GCTTCACAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGCAATCTTGATCCGgtgaaggcctaaatcctactctttattatcag-ctcttcaattcat---ttgaatcaatccatctgaatactgagtatattttcatgtttgcattgttaacag

upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 5
GCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaaccaaattatgcaagtgttaatcagactca-tgcagttatgcattgaattcaagacttaaacatgagtgttcctaatgttgttgcag
||||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||| |||||||||| |     |     | | | | |  ||  |  | ||    | |||| |||     |  | | || |  | |   |  | || | |   
GCATCTCAAGATAAGAAGAGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCTgtaagtatcttttgtggtagactctgattttgatactctacaaaggt-catttaatctcttagctgacca-ggttttgttttcttttatag---

upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g01470.t01 (Vitis vinifera), 5'ss of exon 5
GCATCCCAAGATAAAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaaccaaattatgcaagtgttaatcagactcatgcagttat-gcattgaattcaagactt---aaacatgagtgttcctaatgttgttgcag----------------------------------------------
||||| ||||||||||||||| |||||||||| ||||| |||||  |||| || ||||||||||||||||    ||||    |  | ||| | |   | ||   |   | | |||| ||  ||  |||        |||  |   |       ||||  |                                              
GCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGAAACCTTGATCCTgtaagtagttcaattccttat-ttttatttatttttattgggaagttgtattgtatcaaaacctttgtgggtgtgaaggactcatggacagttgttgtatcactagtttcaattttaaagttgaccctggatgttctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165828|gb|HO008799.1|HO008799
EST:     AAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCT                         GATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATT
genomic: AAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaacc ... gttgttgcagGATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATT
EST: gi|18040641|gb|BM308944.1|BM308944
EST:     AAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCT                         GATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATT
genomic: AAAAGAGCCTGGATGTTGGTGCAAATCTTTTCATTGGCAATCTTGATCCTgtaagtaacc ... gttgttgcagGATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATT