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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGAGATCAATTGGGTCACCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATATGTGATCGgtaagttcaaattcatttgtatgagtaatgatttatgaatacttatatgtgacaaattgagtcacccagtctaatttagactcattggattggattaaaa...

Basic information

species Glycine max
transcript GLYMA12G36610.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36610.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 6
AGATTGAGATCAATTGGGTCACCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATATGTGATCGgtaagttcaaattcatttg--tatgagtaatgatttatgaata-ctta-tatgtgacaaattgagtcacccagtctaatttagactcattggattggattaaaa
| ||||||| |  | ||  | ||||||||||||||||||||||||||||||||  | ||||||||||||||||| || | |||||| |||||||  |  ||| |||  |  || ||||   | |  || ||  | | |   |  |||| | |||  |  ||     |      |     ||  || |||   ||||   ||   
ACATTGAGAGCTCTCGGAGCTCCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGGGTTTTTCGAGGGTTCAAGGATACCAAAACTCCCTTATATGCCACTGgtgagtagaccttaatttccttctttgttatcctcttttgttgtcttactctgtatctcatcagtacttatgttagggctttaacccatcccattga--tag--

upper sequence: GLYMA12G36610.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 5
AGATTGAGATCAATTGGGTCACCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATATGTGATCGgtaag-------ttcaaattcatttgtatgagtaatgatttatgaatacttatatgtgacaaattgagtcacccagtctaatttagactcattggattggattaaaa------------------------------------
| ||| |||||| ||||  | || |||||||||||||| || |||||||||||| | ||||| || || ||||| |||| |||||||||||| |  |  ||| ||       ||    ||   || |     |      | ||    | |  | |   |||  ||      |   |||  ||| |     |    |||    |||                                      
ACATTAAGATCACTTGGTGCTCCGGCTGTTCTTCTCTCTTTAGCCATGCAAGGAGTTTTTCGGGGTTTTAAGGATACAAAAACTCCTTTATACGCCACTGgtgagcaatagcttttggttacctttttccttttcctcctcattcgcattattcttcaacattttttaaaccttggtccgatt-acttgtagccaattcagctaatttactctatttcatttgcaatttttggtctaccatag