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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTGTGATCCTGTTAAGAATTTTGATAGGTCGAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGgttggacagcataataacttgtacctgaatttataaatgaaaattcttatgttaagccttggaatattgccattttcag

Basic information

species Glycine max
transcript GLYMA12G36520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G47460.1 (Arabidopsis thaliana), 5'ss of exon 5
ATACTGTGATCCTGTTAAGAATTTTGATAGGTCGAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGgttggacagcataataacttgtacctgaatttataaatgaaaattcttatgttaagccttggaatattgccatttt--cag
|||| | |||||||| || || |||||| | || |||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||| ||  | |||||  |  ||  || ||  ||||   |  |||  || |          |   || ||   |  ||  |  | |||||  |||
ATACCGCGATCCTGTGAAAAACTTTGATCGATCAAAGGTGAAAGGTGTGGTTGCAAAACTGATAAAAGTGAATGATAGGTCCTCAATGACAGCTTTGGAGgtaagtaagt-tattatattgttgttatattattatactttgtcagattgtttgagttctctaaggtgactattttttcag

upper sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G62410.1 (Arabidopsis thaliana), 5'ss of exon 5
ATACTGTGATCCTGTTAAGAATTTTGATAGGTCGAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGgttggacagcataataacttgtacctgaatttata--aatgaaaattc--ttatgttaagccttggaatattgccattttcag
|||| | |||||||| | ||| |||||  | || |||||||||||||| || |||||||| || |||||||| ||||||||| ||||||| ||  | |||||  ||| | |||     |  |  |  |||  | |    ||  | |||  ||   | ||| |        ||    ||| |||
ATACAGCGATCCTGTGAGGAACTTTGACCGATCTAAGGTGAAAGGTGTGGTCGCAAAACTAATAAAAGTAAAAGATAGGTCCTCAATGACAGCGTTGGAGgt-agactggatatcttatcatttcacaataaacactgttgggatttcaattgcctgaagtcactttgc-ttcttgtttccag

upper sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 5
ATACTGTGATCCTGTTAAGAATTTTGATAGGTCGAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGgttggaca-gcataataacttgtacctgaatt--tataaatgaa--aattcttatgttaagccttggaat-----attgccattttcag-----------------------
||||  ||| ||  | ||||||||||||||||| | |||||||||||| ||||||||||| || ||||| |||||||| ||||||||||||||| ||||||||||  | |||| |||   | ||  ||  ||  | | || |    ||||| | ||  ||   ||   |      | |  |||   ||                        
ATACCATGACCCATTGAAGAATTTTGATAGGTCAAGGGTGAAAGGTGTGGTTGCAAAACTAATTAAAGTGAAGGATAGCTCCACAATGACTGCCTTAGAGgttgggaatgcatgatagtatataattggtttgctttcaagggcttaattcatttgccaatgtttatgactacaaaataacatacgcattcttatgctgagttcacttatag