Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGTAGATCTATTGGGAAAATGGAAGGAATCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaattgctgacaaattgatgttcagtgctttgtatgctgtatatatactaattgtcagccagctatgtactgctttcatctttctcatttgataaccctaatttgtgcctttgctgtatatgtttttcatctttctcatttgataaccctaatttgtgcctttgctgtatatgttttgcag

Basic information

species Glycine max
transcript GLYMA12G35990.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666291|gb|AW277750.1|AW277750
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254329728|gb|GR839281.1|GR839281
EST:     CAGTCTGTT-CTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254316196|gb|GR827733.1|GR827733
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|193442814|gb|FK404220.1|FK404220
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTAGTGT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTT-GTGT
EST: gi|254330003|gb|GR839556.1|GR839556
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|151405434|gb|EV275248.1|EV275248
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|15287746|gb|BI471637.1|BI471637
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254335629|gb|GR847157.1|GR847157
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|15287699|gb|BI471590.1|BI471590
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254347544|gb|GR853793.1|GR853793
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|207833064|gb|GD805269.1|GD805269
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|193345515|gb|FK313682.1|FK313682
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|193415995|gb|FK376657.1|FK376657
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254335630|gb|GR847158.1|GR847158
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|6916447|gb|AW397977.1|AW397977
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254345254|gb|GR855804.1|GR855804
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|58018067|gb|CX704809.1|CX704809
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|192304123|gb|FG993925.1|FG993925
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|193382628|gb|FK345839.1|FK345839
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254345253|gb|GR855803.1|GR855803
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|254347543|gb|GR853792.1|GR853792
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTT
EST: gi|208122993|gb|GD923223.1|GD923223
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
EST: gi|151407584|gb|EV277399.1|EV277399
EST:     CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAG                         CTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaat ... tgttttgcagCTTAGCTGATATGGCGGCCAATCCTTTCCATGCACTGTTCTATCTTGTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTTGTAGATCTATTGGGAAAATGGAAGGAATCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCATCCAGgtaggagaattgctgacaaattgatgttcagtgctttgtatgctgtatatatactaattgtcagccagctatgtactgctttcatctttctcatttgataaccctaatttgtgcctttgctgtatatgtttttcatctttctcatttgataaccctaatttgtgcctttgctgtatatgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG