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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAGgtgagccaaaatactaatattatttttttttcctttgtaattattaattacgtacaaaatttacatttctcactgcaatttgaagcaaaatgaattgaccatatggttgacatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcag

Basic information

species Glycine max
transcript GLYMA12G34750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 11
GGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAGgtgagccaaaatactaatattatttttttttcctttgtaattattaattacgtacaaaatttacatttctcactgcaatttgaagcaaaatgaattgaccatatggttgacatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcag
|||||||||||||| || || |||||||||||||  |||||| |||||||||||||||| ||||| |                  |||  ||||||||  ||  | |||     ||   | | || | || || ||     ||  |||   |                                                                           
GGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTTTTGAGTATACAGAGgtaaa----------------gtttacttttccttaata--tgttatggtggtggcagactt-ctttgcttacatattttcaaagtgcag--------------------------------------------------------------------------

upper sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 10
GGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAGgtgagccaaaatactaatattatttttttttcctttgtaattattaattacgtacaaaatttacatttctcactgcaatttgaagcaaaatgaattgaccatatggttgacatttgaagccatcccacagttcttcaataatcattaaaatcttcataatgcag
||||||||||| |||||||| ||||| || |||| ||| ||| |||||||||| || |||||||| |||||      |   |||  || |||   ||||  || ||||   |    ||  | || |  ||| | | ||||                                                                                       
GGAAATCAATACCGCCCAACCAAGATCCCATTGAAGTCAGTGAGGCCTTTTGAATACACTGAGgtaagcca-----ttgtcatt--ttgtttcatctttaaaaatattt-ctgttgactcacttgatgtttgtga-tgcag--------------------------------------------------------------------------------------