1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGTGGAAAGGTGAATTTTCAGTTGATGATGAAGGTACCCTTGAAGAAGTGCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttagtctctgttttttaatttatacattcttaatttccttgatttccccttggtaaatttgccaaaatttatgcatttctgtgaggcatgatcaattaatagcaattaactagggttatcattgtcaactttaaagaggttttatagccattctaatttagacttcatttttgtgtaatcattcag
species | Glycine max |
transcript | GLYMA12G34150.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTTGA-TATATAAAG AAGCACAAATGTGTEST: gi|21600577|gb|BQ610908.1|BQ610908
genomic: GCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTT-GAATATATAAAGgttagtctct ... aatcattcagAAGCACAAATGTGT
EST: TGCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAG AAGCACAAATGTGTTCCCTTGGAAGATCTTGCTGCAGAATTTAAATTGCGTEST: gi|209696573|gb|BW672858.1|BW672858
genomic: TGCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttagtctct ... aatcattcagAAGCACAAATGTGTTCCCTTGGAAGATCTTGCTGCAGAATTTAAATTGCGT
EST: TGCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAG AAGCACAAATGTGTTCCCTTGGAAGATCTTGCTGCAGAATTTAAATTGCGT
genomic: TGCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttagtctct ... aatcattcagAAGCACAAATGTGTTCCCTTGGAAGATCTTGCTGCAGAATTTAAATTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGGAAAGGTGAATTTTCAGTTGATGATGAAGGTACCCTTGAAGAAGTGCAGGGTAATACTGAAGACTTGCTAGGCAATTTTGTTGAATATATAAAGgttagtctctgttttttaatttatacattcttaatttccttgatttccccttggtaaatttgccaaaatttatgcatttctgtgaggcatgatcaattaatagcaattaactagggttatcattgtcaactttaaagaggttttatagccattctaatttagacttcatttttgtgtaatcattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA