Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattattactagaagacttgtattaagctttggtttactatttctatgggtctattaagatgtataataattaataaaaattagggtcagggatagtt...

Basic information

species Glycine max
transcript GLYMA12G33800.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33800.3 (Glycine max), 5'ss of exon 5
lower sequence: PP1S348_15V6.1 (Physcomitrella patens), 5'ss of exon 5
GACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattattactagaagacttgtattaagctttggtttactatttctatgggtctattaagatgtataataattaataaaaattagggtcagggata-gtt
|| || ||||  |||||||| ||||| |||||||| || |||||||| || || ||||||||||| ||| ||||||| || ||  | |  || || ||||||   ||  ||  |  |    ||     | ||||       ||   || ||         |  |  |     ||  |   | |  |   | ||  |  | |
GATACGTTGAGCGAGGAGTCGTACAAGGACAGCACGTTGATCATGCAGCTACTAAGGGACAACCTGACTCTGTGGACGTCGGATCTGCAGGAGGAGGGAGgtgggtag-acgtgtggcgcggtgcagtggtttgcgggtggatggatagggagagggggtgtgggttgtgcgttggtgggagtgtgtagcgggcgtgtgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208049632|gb|GD847037.1|GD847037
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|207679439|gb|GD662115.1|GD662115
EST:     TGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193635649|gb|FK579290.1|FK579290
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208138756|gb|GD938082.1|GD938082
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATG-CCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193352296|gb|FK314270.1|FK314270
EST:     TTCTGACATCCCTAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TTCTGACATCCC-AGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193460878|gb|FK428431.1|FK428431
EST:     GGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: GGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|192321935|gb|FK012487.1|FK012487
EST:     TTTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193695981|gb|FK636119.1|FK636119
EST:     CTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: CTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193648791|gb|FK600674.1|FK600674
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|209711178|gb|BW676451.1|BW676451
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193696028|gb|FK637496.1|FK637496
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAG-TGTGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|58018472|gb|CX705214.1|CX705214
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208206699|gb|GE004604.1|GE004604
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|163922893|gb|EH039539.1|EH039539
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208037924|gb|GD835700.1|GD835700
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208320379|gb|GE122100.1|GE122100
EST:     AGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: AGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|207784673|gb|GD757766.1|GD757766
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|214006758|gb|DB987640.1|DB987640
EST:     CAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: CAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|192332264|gb|FK023913.1|FK023913
EST:     TTTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193316495|gb|FK278977.1|FK278977
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAG
EST: gi|208215481|gb|GE012482.1|GE012482
EST:     CCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: CCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208254941|gb|GE056905.1|GE056905
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193497915|gb|FK458711.1|FK458711
EST:     TGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|192322094|gb|FK012198.1|FK012198
EST:     TTTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|10848101|gb|BF070654.1|BF070654
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|31456844|gb|CD398872.1|CD398872
EST:     AGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCGACAGCCAAGCTTGGTGGAGGTGAGGAG
genomic: AGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGC-ACTGCCAAGCTTGGTGGAGGTGAGGAG
EST: gi|193493809|gb|FK458431.1|FK458431
EST:     CTTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: C-TCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|15813734|gb|BI786009.1|BI786009
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|5666946|gb|AI930982.1|AI930982
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|254334704|gb|GR844489.1|GR844489
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|207843408|gb|GD814797.1|GD814797
EST:     AGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: AGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208148459|gb|GD951125.1|GD951125
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|254345747|gb|GR859394.1|GR859394
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|209703893|gb|BW670748.1|BW670748
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|15336997|gb|BI497653.1|BI497653
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208313927|gb|GE114285.1|GE114285
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|151404414|gb|EV274224.1|EV274224
EST:     TCTCAGG-ACAACCTAACTTTGTGGACTTCTGACATCCCAGA-GATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAG-TGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGG
EST: gi|208209500|gb|GE005212.1|GE005212
EST:     TCTCAGGGACAACCTAACTTTGTGG-CTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|209716797|gb|BW679589.1|BW679589
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193393480|gb|FK359738.1|FK359738
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAG
EST: gi|193649336|gb|FK594989.1|FK594989
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|58015906|gb|CX702648.1|CX702648
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208198601|gb|GD998450.1|GD998450
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208186292|gb|GD984597.1|GD984597
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208318426|gb|GE110277.1|GE110277
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|14126273|gb|BG790711.1|BG790711
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193491652|gb|FK456918.1|FK456918
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|207824295|gb|GD793739.1|GD793739
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|193714784|gb|FK652765.1|FK652765
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208041194|gb|GD842637.1|GD842637
EST:     ACATCCCAGAAGANGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: ACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|209720671|gb|BW677514.1|BW677514
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208149362|gb|GD948892.1|GD948892
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|7041625|gb|AW471577.1|AW471577
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|8825984|gb|BE209714.1|BE209714
EST:     CTCAAGGGACACCCTTACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: CTC-AGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208040831|gb|GD843338.1|GD843338
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|5677885|gb|AI939015.1|AI939015
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208164677|gb|GD961111.1|GD961111
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208184112|gb|GD982376.1|GD982376
EST:     TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: TCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
EST: gi|208167567|gb|GD965177.1|GD965177
EST:     AGGGACAACCTAACTTTGTTGGACTTCTGACATCCCAGAAGATGGAG                         AAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG
genomic: AGGGACAACCTAACTTTG-TGGACTTCTGACATCCCAGAAGATGGAGgtaattatta ... gctgttacagAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGgtaattattactagaagacttgtattaagctttggtttactatttctatgggtctattaagatgtataataattaataaaaattagggtcagggatagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA