1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGAATCCCACCACGCCATGCAATGTACCAAATACTAGATCCAGGCATTGGCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCGgtaaatttgtatgcatatgtctgattaaattgatgatagatttcttaaataaaatcttatatagatttaagttttgtagatgaaaaaatataaataaaag...
species | Glycine max |
transcript | GLYMA12G33430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCG TCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAAAACCATGGEST: gi|22928072|gb|BU545211.1|BU545211
genomic: GCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCGgtaaatttgt ... attttgacagTCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAAAACCATGG
EST: GCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCG TCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAANNNCATGGEST: gi|19347434|gb|BM892314.1|BM892314
genomic: GCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCGgtaaatttgt ... attttgacagTCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAAAACCATGG
EST: GCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCG TCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAAAACCATGG
genomic: GCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCGgtaaatttgt ... attttgacagTCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTCTATCAAAACCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAATCCCACCACGCCATGCAATGTACCAAATACTAGATCCAGGCATTGGCATCCCGGCCAGCCAAACGCCACCTCGACCCCTCGTCGACTTTCATCCGgtaaatttgtatgcatatgtctgattaaattgatgatagatttcttaaataaaatcttatatagatttaagttttgtagatgaaaaaatataaataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa