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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggatcaagttccttttccacctcttttactgtttggactcaaaggattattcagtgttctcagtggcttagtgttttgtttctttggtggtatag

Basic information

species Glycine max
transcript GLYMA12G32060.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 4
---TTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggatcaagttccttttccacctcttttactgtttggactcaaaggattattcagtgttctcagtggcttagtgttttgtttctttggtggtatag
   |||| |||||||| || |||||||| ||||| ||||| |||||||||||||||||||| || |||||||||  || |  |  |    |   ||||    || | || |  |  |   |    |  ||   |||| | ||| |||| | || | |||  |   ||      
GAGTTTGCAACCATGCATTCCACTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTGTGCCCTCTAGgttggttgccctggaaaatg--ccac----ttaattggtgtggttgttacctctgctc---gttcaccgtgccttacttttctattttatctatgcag---

upper sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G361074_T02 (Zea mays), 5'ss of exon 2
---TTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggatcaagttccttttccacctcttttac-tgtttggactcaaaggattattcagtgttctcagtggcttagtgttttgttt---ctttggtggtatag
   |||| |||||||| || |||||||| || || ||||| ||||| |||||||||||||| || ||||| |||  || |  |  |    | | || | |  |  |  || |||   |       | ||||   || | ||  | || |   | |  |||    ||||    |  ||
GAATTTGCAACCATGCATTCCACTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagccctggcatttctgcctcttgatcaatgtgattgttttttgttactcattcc-cgtccacaccgcctcaccttctaatttgtaatttgacactgcag

upper sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 5
lower sequence: EFJ06425 (Selaginella moellendorffii), 5'ss of exon 3
---TTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggatcaagttccttttccacctcttttactgtttggactcaaaggattattcagtgttctcagtggcttagtgttttgtttctttggtggtatag
   | || |||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| |||| |  ||  ||      |||| |   ||||  || ||   ||||      || ||   |     |||                                
GCGTGTGCAACCATGCGTTTCACTTCCACTGCATCAGCCGCTGGCTAAAGACTCGCCAAGTCTGCCCTCTCGgtaagacgaagaaacaaactttc-agagctttgcctctt---actcgtccagttttt---ttcctccag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17152950|gb|BM142883.1|BM142883
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggat ... ggtggtatagATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|17023367|gb|BM094401.1|BM094401
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggat ... ggtggtatagATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG
EST: gi|4396229|gb|AI495226.1|AI495226
EST:     TTCCATTGCATAAGCCGATGGCTCAAGGACCCGTCAAG-ATGTCCTCTAG                         ATAATAAGCGA-TGGG
genomic: TTCCATTGCATAAGCCGATGGCTCAAG-ACCCGTCAAGTATGTCCTCTAGgtatgtggat ... ggtggtatagATAATA-GCGAGTGGG
EST: gi|6848570|gb|AW350860.1|AW350860
EST:     CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG                         ATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG
genomic: CTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGgtatgtggat ... ggtggtatagATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGG